Search results for the GEO ID: GSE13221  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM333991 | GPL339 |
|
AKR_2095A
|
(AKR/J x PyMT)F1 female
|
highly metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333991
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333991/suppl/GSM333991.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
| | |
|
GSM333992 | GPL339 |
|
AKR_2240
|
(AKR/J x PyMT)F1 female
|
highly metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333992
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333992/suppl/GSM333992.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
| | |
|
GSM333993 | GPL339 |
|
AKR_2242A
|
(AKR/J x PyMT)F1 female
|
highly metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333993
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333993/suppl/GSM333993.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
| | |
|
GSM333994 | GPL339 |
|
DBA_4970A
|
(DBA/2J x PyMT)F1 female
|
low metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333994
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333994/suppl/GSM333994.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
| | |
|
GSM333995 | GPL339 |
|
DBA_4971A
|
(DBA/2J x PyMT)F1 female
|
low metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333995
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333995/suppl/GSM333995.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
| | |
|
GSM333996 | GPL339 |
|
DBA_4972
|
(DBA/2J x PyMT)F1 female
|
low metastatic
|
gene expression from tumor
|
| Sample_geo_accession | GSM333996
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tumor samples were snap frozen in LN2 prior to RNA isolation
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL339
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333996/suppl/GSM333996.CEL.gz
| | Sample_series_id | GSE13221
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 22690
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