Search results for the GEO ID: GSE13222 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM333997 | GPL1261 |
|
blood_akr1
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from whole blood
|
Sample_geo_accession | GSM333997
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Blood was collected by cardiac puncture
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was amplified using the Affymetrix 2-cycle kit. Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333997/suppl/GSM333997.CEL.gz
| Sample_series_id | GSE13222
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM333998 | GPL1261 |
|
blood_akr2
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from whole blood
|
Sample_geo_accession | GSM333998
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Blood was collected by cardiac puncture
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was amplified using the Affymetrix 2-cycle kit. Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333998/suppl/GSM333998.CEL.gz
| Sample_series_id | GSE13222
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM333999 | GPL1261 |
|
blood_dba1
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from whole blood
|
Sample_geo_accession | GSM333999
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Blood was collected by cardiac puncture
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was amplified using the Affymetrix 2-cycle kit. Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM333nnn/GSM333999/suppl/GSM333999.CEL.gz
| Sample_series_id | GSE13222
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334000 | GPL1261 |
|
blood_dba2
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from whole blood
|
Sample_geo_accession | GSM334000
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Blood was collected by cardiac puncture
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was amplified using the Affymetrix 2-cycle kit. Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334000/suppl/GSM334000.CEL.gz
| Sample_series_id | GSE13222
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334001 | GPL1261 |
|
blood_dba3
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from whole blood
|
Sample_geo_accession | GSM334001
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Blood was collected by cardiac puncture
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was amplified using the Affymetrix 2-cycle kit. Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334001/suppl/GSM334001.CEL.gz
| Sample_series_id | GSE13222
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
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