Search results for the GEO ID: GSE13223 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM334002 | GPL1261 |
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bone_marrow_akr1
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334002
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334002/suppl/GSM334002.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334003 | GPL1261 |
|
bone_marrow_akr2
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334003
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334003/suppl/GSM334003.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334004 | GPL1261 |
|
bone_marrow_akr3
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334004
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334004/suppl/GSM334004.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334005 | GPL1261 |
|
bone_marrow_dba1
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334005
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334005/suppl/GSM334005.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334006 | GPL1261 |
|
bone_marrow_dba2
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334006
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334006/suppl/GSM334006.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
|
GSM334007 | GPL1261 |
|
bone_marrow_dba3
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
Sample_geo_accession | GSM334007
| Sample_status | Public on Nov 30 2008
| Sample_submission_date | Oct 16 2008
| Sample_last_update_date | Oct 16 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| Sample_platform_id | GPL1261
| Sample_contact_name | Kent,,Hunter
| Sample_contact_email | hunterk@mail.nih.gov
| Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| Sample_contact_department | Center for Cancer Research
| Sample_contact_institute | National Cancer Institute
| Sample_contact_address | 37/5046 37 Convent Drive
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892-4264
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334007/suppl/GSM334007.CEL.gz
| Sample_series_id | GSE13223
| Sample_series_id | GSE13231
| Sample_data_row_count | 45101
| |
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