Search results for the GEO ID: GSE13227  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM334021 | GPL1261 |
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thymus akr1
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(AKR/J x FVB/NJ)F1 female
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highly metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334021
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334021/suppl/GSM334021.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
| | |
|
GSM334022 | GPL1261 |
|
thymus akr2
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334022
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334022/suppl/GSM334022.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
| | |
|
GSM334023 | GPL1261 |
|
thymus akr3
|
(AKR/J x FVB/NJ)F1 female
|
highly metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334023
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334023/suppl/GSM334023.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
| | |
|
GSM334024 | GPL1261 |
|
thymus dba1
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334024
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334024/suppl/GSM334024.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
| | |
|
GSM334025 | GPL1261 |
|
thymus dba2
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334025
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334025/suppl/GSM334025.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
| | |
|
GSM334026 | GPL1261 |
|
thymus dba3
|
(DBA/2J x FVB/NJ)F1 female
|
low metastatic
|
gene expression from tissue
|
| Sample_geo_accession | GSM334026
| | Sample_status | Public on Nov 30 2008
| | Sample_submission_date | Oct 16 2008
| | Sample_last_update_date | Oct 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | animals were euthanized by cervical dislocation under Avertin anesthesia. Tissue was snap frozen in LN2 prior to RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted by Trizol following the manufacturers suggested protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling was performed following the standard Affymetrix protocol
| | Sample_hyb_protocol | Hybridization was performed following Affymetrix standard protocols .GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Microarrays were scanned using an Agilent GeneArray Scanner
| | Sample_data_processing | The data was processed using Affymetrix Microarray Suite version 5.0.0.032. RMA normalization was performed using BRB Array Tools version 3.7.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kent,,Hunter
| | Sample_contact_email | hunterk@mail.nih.gov
| | Sample_contact_laboratory | Laboratory of Cancer Biology and Genetics
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 37/5046 37 Convent Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-4264
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334026/suppl/GSM334026.CEL.gz
| | Sample_series_id | GSE13227
| | Sample_series_id | GSE13231
| | Sample_data_row_count | 45101
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