Search results for the GEO ID: GSE13259  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM334730 | GPL1261 |
|
Spontaneous epithelial mammary tumor cell line, replicate 1
|
mammary tumor
|
Strain: FVB/N-TgN(MMTVneu)202Mul, female, mammary adenocarcinoma
|
E
|
| Sample_geo_accession | GSM334730
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334730/suppl/GSM334730.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334731 | GPL1261 |
|
Spontaneous epithelial mammary tumor cell line, replicate 2
|
mammary tumor
|
Strain: FVB/N-TgN(MMTVneu)202Mul, female, mammary adenocarcinoma
|
E(2)
|
| Sample_geo_accession | GSM334731
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334731/suppl/GSM334731.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334732 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 1, replicate 1
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M1
|
| Sample_geo_accession | GSM334732
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334732/suppl/GSM334732.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334733 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 1, replicate 2
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
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M1(2)
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| Sample_geo_accession | GSM334733
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334733/suppl/GSM334733.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334734 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 2, replicate 1
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M2
|
| Sample_geo_accession | GSM334734
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334734/suppl/GSM334734.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334735 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 2, replicate 2
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M2(2)
|
| Sample_geo_accession | GSM334735
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334735/suppl/GSM334735.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334736 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 3, replicate 1
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M3
|
| Sample_geo_accession | GSM334736
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334736/suppl/GSM334736.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334737 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 3, replicate 2
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M3(2)
|
| Sample_geo_accession | GSM334737
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334737/suppl/GSM334737.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334738 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 4, replicate 1
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M4
|
| Sample_geo_accession | GSM334738
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334738/suppl/GSM334738.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
| | |
|
GSM334739 | GPL1261 |
|
Relapsed mesenchymal mammary tumor cell line 4, replicate 2
|
mammary tumor
|
Strain: FVB/N, female, relapsed tumor resulting from injection of E cells
|
M4(2)
|
| Sample_geo_accession | GSM334739
| | Sample_status | Public on Apr 01 2009
| | Sample_submission_date | Oct 17 2008
| | Sample_last_update_date | Oct 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Cells grown in 10% FBS RPMI complete media, 80% confluent 10cm dishes
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was isolated using RNeasy Plus Mini Kit (Qiagen) according to manufacturer's recommendations.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA probes were synthesized using a Message AMP II kit (Ambion).
| | Sample_hyb_protocol | 15μg of each labeled probe was mixed with Affymetrix hybridization spike controls in a standard hybridization solution and heated to 95°C for 5 min, 45°C for 5 min, centrifuged to remove particulates and hybridized to Affymetrix Mouse 430_2 chips. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using a GeneChip Scanner 3000.
| | Sample_data_processing | The data was analyzed using Affymetrix GCOS v1.3 software with a scaling target signal of 500 and a normalization of 1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Keith,L,Knutson
| | Sample_contact_email | knutson.keith@mayo.edu
| | Sample_contact_department | Immunology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM334nnn/GSM334739/suppl/GSM334739.cel.gz
| | Sample_series_id | GSE13259
| | Sample_data_row_count | 45101
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