Search results for the GEO ID: GSE13270  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM335052 | GPL1355 |
|
RLDP-4wk_normal_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 1, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335052
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335052/suppl/GSM335052.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335052/suppl/GSM335052.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335053 | GPL1355 |
|
RLDP-4wk_normal_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 2, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335053
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335053/suppl/GSM335053.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335053/suppl/GSM335053.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335054 | GPL1355 |
|
RLDP-4wk_normal_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 3, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335054
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335054/suppl/GSM335054.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335054/suppl/GSM335054.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335055 | GPL1355 |
|
RLDP-4wk_normal_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 4, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335055
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335055/suppl/GSM335055.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335055/suppl/GSM335055.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335056 | GPL1355 |
|
RLDP-4wk_normal_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 5, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335056
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335056/suppl/GSM335056.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335056/suppl/GSM335056.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335057 | GPL1355 |
|
RLDP-4wk_highfat_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 1, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335057
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335057/suppl/GSM335057.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335057/suppl/GSM335057.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335058 | GPL1355 |
|
RLDP-4wk_highfat_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 2, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335058
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335058/suppl/GSM335058.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335058/suppl/GSM335058.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335059 | GPL1355 |
|
RLDP-4wk_highfat_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 3, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335059
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335059/suppl/GSM335059.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335059/suppl/GSM335059.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335060 | GPL1355 |
|
RLDP-4wk_highfat_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 4, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335060
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335060/suppl/GSM335060.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335060/suppl/GSM335060.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335061 | GPL1355 |
|
RLDP-4wk_highfat_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from GK rat 5, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335061
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335061/suppl/GSM335061.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335061/suppl/GSM335061.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335062 | GPL1355 |
|
RLDP-4wk_normal_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335062
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335062/suppl/GSM335062.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335062/suppl/GSM335062.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335063 | GPL1355 |
|
RLDP-4wk_normal_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335063
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335063/suppl/GSM335063.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335063/suppl/GSM335063.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335064 | GPL1355 |
|
RLDP-4wk_normal_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335064
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335064/suppl/GSM335064.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335064/suppl/GSM335064.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335065 | GPL1355 |
|
RLDP-4wk_normal_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335065
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335065/suppl/GSM335065.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335065/suppl/GSM335065.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335066 | GPL1355 |
|
RLDP-4wk_normal_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with ND and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with ND and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335066
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335066/suppl/GSM335066.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335066/suppl/GSM335066.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335067 | GPL1355 |
|
RLDP-4wk_highfat_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335067
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335067/suppl/GSM335067.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335067/suppl/GSM335067.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335068 | GPL1355 |
|
RLDP-4wk_highfat_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335068
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335068/suppl/GSM335068.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335068/suppl/GSM335068.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335069 | GPL1355 |
|
RLDP-4wk_highfat_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335069
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335069/suppl/GSM335069.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335069/suppl/GSM335069.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335070 | GPL1355 |
|
RLDP-4wk_highfat_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335070
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335070/suppl/GSM335070.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335070/suppl/GSM335070.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335071 | GPL1355 |
|
RLDP-4wk_highfat_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with HFD and sacrificed at 4 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with HFD and sacrificed at 4 weeks
|
| Sample_geo_accession | GSM335071
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335071/suppl/GSM335071.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335071/suppl/GSM335071.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335072 | GPL1355 |
|
RLDP-8wk_normal_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 1, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335072
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335072/suppl/GSM335072.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335072/suppl/GSM335072.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335073 | GPL1355 |
|
RLDP-8wk_normal_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 2, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335073
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335073/suppl/GSM335073.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335073/suppl/GSM335073.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335074 | GPL1355 |
|
RLDP-8wk_normal_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 3, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335074
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335074/suppl/GSM335074.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335074/suppl/GSM335074.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335075 | GPL1355 |
|
RLDP-8wk_normal_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 4, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335075
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335075/suppl/GSM335075.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335075/suppl/GSM335075.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335076 | GPL1355 |
|
RLDP-8wk_normal_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 5, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335076
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335076/suppl/GSM335076.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335076/suppl/GSM335076.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335077 | GPL1355 |
|
RLDP-8wk_highfat_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 1, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335077
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335077/suppl/GSM335077.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335077/suppl/GSM335077.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335078 | GPL1355 |
|
RLDP-8wk_highfat_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 2, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335078
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335078/suppl/GSM335078.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335078/suppl/GSM335078.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335079 | GPL1355 |
|
RLDP-8wk_highfat_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 3, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335079
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335079/suppl/GSM335079.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335079/suppl/GSM335079.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335080 | GPL1355 |
|
RLDP-8wk_highfat_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 4, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335080
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335080/suppl/GSM335080.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335080/suppl/GSM335080.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335081 | GPL1355 |
|
RLDP-8wk_highfat_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from GK rat 5, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335081
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335081/suppl/GSM335081.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335081/suppl/GSM335081.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335082 | GPL1355 |
|
RLDP-8wk_normal_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335082
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335082/suppl/GSM335082.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335082/suppl/GSM335082.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335083 | GPL1355 |
|
RLDP-8wk_normal_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335083
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335083/suppl/GSM335083.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335083/suppl/GSM335083.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335084 | GPL1355 |
|
RLDP-8wk_normal_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335084
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335084/suppl/GSM335084.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335084/suppl/GSM335084.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335085 | GPL1355 |
|
RLDP-8wk_normal_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335085
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335085/suppl/GSM335085.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335085/suppl/GSM335085.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335086 | GPL1355 |
|
RLDP-8wk_normal_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with ND and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with ND and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335086
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335086/suppl/GSM335086.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335086/suppl/GSM335086.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335087 | GPL1355 |
|
RLDP-8wk_highfat_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335087
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335087/suppl/GSM335087.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335087/suppl/GSM335087.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335088 | GPL1355 |
|
RLDP-8wk_highfat_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335088
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335088/suppl/GSM335088.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335088/suppl/GSM335088.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335089 | GPL1355 |
|
RLDP-8wk_highfat_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335089
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335089/suppl/GSM335089.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335089/suppl/GSM335089.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335090 | GPL1355 |
|
RLDP-8wk_highfat_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335090
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335090/suppl/GSM335090.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335090/suppl/GSM335090.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335091 | GPL1355 |
|
RLDP-8wk_highfat_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with HFD and sacrificed at 8 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with HFD and sacrificed at 8 weeks
|
| Sample_geo_accession | GSM335091
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335091/suppl/GSM335091.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335091/suppl/GSM335091.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335092 | GPL1355 |
|
RLDP-12wk_normal_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 1, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335092
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335092/suppl/GSM335092.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335092/suppl/GSM335092.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335093 | GPL1355 |
|
RLDP-12wk_normal_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 2, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335093
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335093/suppl/GSM335093.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335093/suppl/GSM335093.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335094 | GPL1355 |
|
RLDP-12wk_normal_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 3, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335094
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335094/suppl/GSM335094.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335094/suppl/GSM335094.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335095 | GPL1355 |
|
RLDP-12wk_normal_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 4, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335095
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335095/suppl/GSM335095.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335095/suppl/GSM335095.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335096 | GPL1355 |
|
RLDP-12wk_normal_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 5, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335096
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335096/suppl/GSM335096.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335096/suppl/GSM335096.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335097 | GPL1355 |
|
RLDP-12wk_highfat_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 1, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335097
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335097/suppl/GSM335097.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335097/suppl/GSM335097.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335098 | GPL1355 |
|
RLDP-12wk_highfat_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 2, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335098
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335098/suppl/GSM335098.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335098/suppl/GSM335098.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335099 | GPL1355 |
|
RLDP-12wk_highfat_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 3, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335099
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335099/suppl/GSM335099.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335099/suppl/GSM335099.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335100 | GPL1355 |
|
RLDP-12wk_highfat_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 4, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335100
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335100/suppl/GSM335100.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335100/suppl/GSM335100.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335101 | GPL1355 |
|
RLDP-12wk_highfat_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from GK rat 5, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335101
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335101/suppl/GSM335101.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335101/suppl/GSM335101.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335102 | GPL1355 |
|
RLDP-12wk_normal_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335102
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335102/suppl/GSM335102.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335102/suppl/GSM335102.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335103 | GPL1355 |
|
RLDP-12wk_normal_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335103
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335103/suppl/GSM335103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335103/suppl/GSM335103.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335104 | GPL1355 |
|
RLDP-12wk_normal_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335104
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335104/suppl/GSM335104.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335104/suppl/GSM335104.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335105 | GPL1355 |
|
RLDP-12wk_normal_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335105
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335105/suppl/GSM335105.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335105/suppl/GSM335105.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335106 | GPL1355 |
|
RLDP-12wk_normal_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with ND and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with ND and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335106
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335106/suppl/GSM335106.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335106/suppl/GSM335106.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335107 | GPL1355 |
|
RLDP-12wk_highfat_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335107
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335107/suppl/GSM335107.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335107/suppl/GSM335107.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335108 | GPL1355 |
|
RLDP-12wk_highfat_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335108
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335108/suppl/GSM335108.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335108/suppl/GSM335108.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335109 | GPL1355 |
|
RLDP-12wk_highfat_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335109
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335109/suppl/GSM335109.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335109/suppl/GSM335109.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335110 | GPL1355 |
|
RLDP-12wk_highfat_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335110
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335110/suppl/GSM335110.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335110/suppl/GSM335110.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335111 | GPL1355 |
|
RLDP-12wk_highfat_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with HFD and sacrificed at 12 weeks
|
Gene expression data of the liver from WKYrat 5, feeded with HFD and sacrificed at 12 weeks
|
| Sample_geo_accession | GSM335111
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335111/suppl/GSM335111.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335111/suppl/GSM335111.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335112 | GPL1355 |
|
RLDP-16wk_normal_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 1, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335112
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335112/suppl/GSM335112.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335112/suppl/GSM335112.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335113 | GPL1355 |
|
RLDP-16wk_normal_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 2, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335113
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335113/suppl/GSM335113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335113/suppl/GSM335113.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335114 | GPL1355 |
|
RLDP-16wk_normal_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 3, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335114
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335114/suppl/GSM335114.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335114/suppl/GSM335114.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335115 | GPL1355 |
|
RLDP-16wk_normal_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 4, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335115
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335115/suppl/GSM335115.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335115/suppl/GSM335115.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335116 | GPL1355 |
|
RLDP-16wk_normal_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 5, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335116
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335116/suppl/GSM335116.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335116/suppl/GSM335116.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335117 | GPL1355 |
|
RLDP-16wk_highfat_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 1, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335117
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335117/suppl/GSM335117.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335117/suppl/GSM335117.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335118 | GPL1355 |
|
RLDP-16wk_highfat_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 2, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335118
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335118/suppl/GSM335118.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335118/suppl/GSM335118.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335119 | GPL1355 |
|
RLDP-16wk_highfat_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 3, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335119
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335119/suppl/GSM335119.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335119/suppl/GSM335119.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335120 | GPL1355 |
|
RLDP-16wk_highfat_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 4, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335120
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335120/suppl/GSM335120.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335120/suppl/GSM335120.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335121 | GPL1355 |
|
RLDP-16wk_highfat_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from GK rat 5, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335121
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335121/suppl/GSM335121.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335121/suppl/GSM335121.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335122 | GPL1355 |
|
RLDP-16wk_normal_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335122
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335122/suppl/GSM335122.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335122/suppl/GSM335122.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335123 | GPL1355 |
|
RLDP-16wk_normal_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335123
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335123/suppl/GSM335123.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335123/suppl/GSM335123.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335124 | GPL1355 |
|
RLDP-16wk_normal_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335124
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335124/suppl/GSM335124.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335124/suppl/GSM335124.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335125 | GPL1355 |
|
RLDP-16wk_normal_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335125
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335125/suppl/GSM335125.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335125/suppl/GSM335125.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335126 | GPL1355 |
|
RLDP-16wk_normal_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with ND and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with ND and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335126
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335126/suppl/GSM335126.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335126/suppl/GSM335126.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335127 | GPL1355 |
|
RLDP-16wk_highfat_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335127
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335127/suppl/GSM335127.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335127/suppl/GSM335127.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335128 | GPL1355 |
|
RLDP-16wk_highfat_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335128
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335128/suppl/GSM335128.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335128/suppl/GSM335128.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335129 | GPL1355 |
|
RLDP-16wk_highfat_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335129
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335129/suppl/GSM335129.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335129/suppl/GSM335129.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335130 | GPL1355 |
|
RLDP-16wk_highfat_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335130
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335130/suppl/GSM335130.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335130/suppl/GSM335130.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335131 | GPL1355 |
|
RLDP-16wk_highfat_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with HFD and sacrificed at 16 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with HFD and sacrificed at 16 weeks
|
| Sample_geo_accession | GSM335131
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335131/suppl/GSM335131.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335131/suppl/GSM335131.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335132 | GPL1355 |
|
RLDP-20wk_normal_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 1, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335132
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335132/suppl/GSM335132.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335132/suppl/GSM335132.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335133 | GPL1355 |
|
RLDP-20wk_normal_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 2, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335133
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335133/suppl/GSM335133.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335133/suppl/GSM335133.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335134 | GPL1355 |
|
RLDP-20wk_normal_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 3, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335134
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335134/suppl/GSM335134.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335134/suppl/GSM335134.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335135 | GPL1355 |
|
RLDP-20wk_normal_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 4, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335135
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335135/suppl/GSM335135.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335135/suppl/GSM335135.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335136 | GPL1355 |
|
RLDP-20wk_normal_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 5, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335136
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335136/suppl/GSM335136.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335136/suppl/GSM335136.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335137 | GPL1355 |
|
RLDP-20wk_highfat_Goto-Kakizake-1RP
|
rat liver
|
liver from GK rat 1, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 1, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335137
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335137/suppl/GSM335137.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335137/suppl/GSM335137.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335138 | GPL1355 |
|
RLDP-20wk_highfat_Goto-Kakizake-2RP
|
rat liver
|
liver from GK rat 2, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 2, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335138
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335138/suppl/GSM335138.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335138/suppl/GSM335138.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335139 | GPL1355 |
|
RLDP-20wk_highfat_Goto-Kakizake-3RP
|
rat liver
|
liver from GK rat 3, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 3, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335139
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335139/suppl/GSM335139.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335139/suppl/GSM335139.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335140 | GPL1355 |
|
RLDP-20wk_highfat_Goto-Kakizake-4RP
|
rat liver
|
liver from GK rat 4, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 4, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335140
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335140/suppl/GSM335140.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335140/suppl/GSM335140.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335141 | GPL1355 |
|
RLDP-20wk_highfat_Goto-Kakizake-5RP
|
rat liver
|
liver from GK rat 5, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from GK rat 5, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335141
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335141/suppl/GSM335141.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335141/suppl/GSM335141.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335142 | GPL1355 |
|
RLDP-20wk_normal_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335142
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335142/suppl/GSM335142.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335142/suppl/GSM335142.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335143 | GPL1355 |
|
RLDP-20wk_normal_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335143
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335143/suppl/GSM335143.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335143/suppl/GSM335143.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335144 | GPL1355 |
|
RLDP-20wk_normal_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335144
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335144/suppl/GSM335144.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335144/suppl/GSM335144.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335145 | GPL1355 |
|
RLDP-20wk_normal_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335145
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335145/suppl/GSM335145.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335145/suppl/GSM335145.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335146 | GPL1355 |
|
RLDP-20wk_normal_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with ND and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with ND and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335146
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335146/suppl/GSM335146.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335146/suppl/GSM335146.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335147 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-1RP
|
rat liver
|
liver from WKY rat 1, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 1, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335147
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335147/suppl/GSM335147.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335147/suppl/GSM335147.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335148 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-2RP
|
rat liver
|
liver from WKY rat 2, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 2, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335148
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335148/suppl/GSM335148.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335148/suppl/GSM335148.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335149 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-3RP
|
rat liver
|
liver from WKY rat 3, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 3, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335149
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335149/suppl/GSM335149.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335149/suppl/GSM335149.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335150 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-4RP
|
rat liver
|
liver from WKY rat 4, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 4, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335150
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335150/suppl/GSM335150.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335150/suppl/GSM335150.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335151 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-5RP
|
rat liver
|
liver from WKY rat 5, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 5, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335151
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335151/suppl/GSM335151.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335151/suppl/GSM335151.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
GSM335152 | GPL1355 |
|
RLDP-20wk_highfat_WistarKyoto-6RP
|
rat liver
|
liver from WKY rat 6, feeded with HFD and sacrificed at 20 weeks
|
Gene expression data of the liver from WKY rat 6, feeded with HFD and sacrificed at 20 weeks
|
| Sample_geo_accession | GSM335152
| | Sample_status | Public on Oct 21 2009
| | Sample_submission_date | Oct 18 2008
| | Sample_last_update_date | Oct 21 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 4 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat 230_2 plus Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | MAS 5
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Svetlana,,Ghimbovschi
| | Sample_contact_laboratory | Hoffman Lab.
| | Sample_contact_department | Research Center for Genetic Medicine
| | Sample_contact_institute | Children's National Medical Center
| | Sample_contact_address | 111 Michigan Ave., NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335152/suppl/GSM335152.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM335nnn/GSM335152/suppl/GSM335152.CHP.gz
| | Sample_series_id | GSE13270
| | Sample_series_id | GSE13271
| | Sample_data_row_count | 31099
| | |
|
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(2 groups will be compared at a time) |
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