Search results for the GEO ID: GSE13335  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM336413 | GPL1261 |
|
L929_replicate_1
|
L929 cell line
|
Unstimulated.
Sensitive to necrosis.
Available from ATCC.
|
RNA analyses were performed at the microarray core facility at the Harvard Medical School and Partners Healthcare Center for Genetics and Genomics.
|
| Sample_geo_accession | GSM336413
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Oct 23 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) and RNeasy columns (Qiagen). The quantity, purity and integrity of RNA were evaluated by UV spectrophotometry and RNA-nano Bioanalyzer (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per Affymetrix instructions.
| | Sample_hyb_protocol | As per Affymetrix instructions.
| | Sample_scan_protocol | As per Affymetrix instructions.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Junying,,Yuan
| | Sample_contact_email | Junying_Yuan@hms.harvard.edu
| | Sample_contact_department | Department of Cell Biology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336413/suppl/GSM336413.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336413/suppl/GSM336413.CHP.gz
| | Sample_series_id | GSE13335
| | Sample_data_row_count | 45101
| | |
|
GSM336415 | GPL1261 |
|
L929_replicate_2
|
L929 cell line
|
Unstimulated.
Sensitive to necrosis.
Available from ATCC.
|
RNA analyses were performed at the microarray core facility at the Harvard Medical School and Partners Healthcare Center for Genetics and Genomics.
|
| Sample_geo_accession | GSM336415
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Oct 23 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) and RNeasy columns (Qiagen). The quantity, purity and integrity of RNA were evaluated by UV spectrophotometry and RNA-nano Bioanalyzer (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per Affymetrix instructions.
| | Sample_hyb_protocol | As per Affymetrix instructions.
| | Sample_scan_protocol | As per Affymetrix instructions.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Junying,,Yuan
| | Sample_contact_email | Junying_Yuan@hms.harvard.edu
| | Sample_contact_department | Department of Cell Biology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336415/suppl/GSM336415.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336415/suppl/GSM336415.CHP.gz
| | Sample_series_id | GSE13335
| | Sample_data_row_count | 45101
| | |
|
GSM336417 | GPL1261 |
|
NIH3T3_replicate_1
|
NIH3T3 cell line
|
Unstimulated.
Sensitive to apoptosis.
Available from ATCC.
|
RNA analyses were performed at the microarray core facility at the Harvard Medical School and Partners Healthcare Center for Genetics and Genomics.
|
| Sample_geo_accession | GSM336417
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Oct 23 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) and RNeasy columns (Qiagen). The quantity, purity and integrity of RNA were evaluated by UV spectrophotometry and RNA-nano Bioanalyzer (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per Affymetrix instructions.
| | Sample_hyb_protocol | As per Affymetrix instructions.
| | Sample_scan_protocol | As per Affymetrix instructions.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Junying,,Yuan
| | Sample_contact_email | Junying_Yuan@hms.harvard.edu
| | Sample_contact_department | Department of Cell Biology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336417/suppl/GSM336417.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336417/suppl/GSM336417.CHP.gz
| | Sample_series_id | GSE13335
| | Sample_data_row_count | 45101
| | |
|
GSM336419 | GPL1261 |
|
NIH3T3_replicate_2
|
NIH3T3 cell line
|
Unstimulated.
Sensitive to apoptosis.
Available from ATCC.
|
RNA analyses were performed at the microarray core facility at the Harvard Medical School and Partners Healthcare Center for Genetics and Genomics.
|
| Sample_geo_accession | GSM336419
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Oct 23 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) and RNeasy columns (Qiagen). The quantity, purity and integrity of RNA were evaluated by UV spectrophotometry and RNA-nano Bioanalyzer (Agilent).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | As per Affymetrix instructions.
| | Sample_hyb_protocol | As per Affymetrix instructions.
| | Sample_scan_protocol | As per Affymetrix instructions.
| | Sample_data_processing | MAS5
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Junying,,Yuan
| | Sample_contact_email | Junying_Yuan@hms.harvard.edu
| | Sample_contact_department | Department of Cell Biology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336419/suppl/GSM336419.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336419/suppl/GSM336419.CHP.gz
| | Sample_series_id | GSE13335
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
