Search results for the GEO ID: GSE13347  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM313203 | GPL1261 |
|
FoxO1 RNAi in C2C12 cells
|
C2C12 cells
|
C2C12 cells were transfected with shRNA against FoxO1.
|
C2C12 cells grown in DMEM transfected with FoxO1 shRNA.
|
| Sample_geo_accession | GSM313203
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Aug 15 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Tjian lab
| | Sample_treatment_protocol_ch1 | C2C12 cells were transfected with shRNA against FoxO1. Different colonies were screened for the best depletion of FoxO1.
| | Sample_growth_protocol_ch1 | C2C12 cells were grown in DMEM with puromycine. All serums used were tested for cytotoxicity.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kit was used to extract total RNA.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Follow the protocol from Affymetrix.
| | Sample_hyb_protocol | Follow the protocol from Affymetrix.
| | Sample_scan_protocol | Follow the protocol from Affymetrix.
| | Sample_data_processing | Using Affymetrix GeneChip GCOS expression analysis software to process.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ping,,Hu
| | Sample_contact_email | hup@berkeley.edu
| | Sample_contact_laboratory | Tjian
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Berkeley
| | Sample_contact_address | Hearst & Oxford
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94564
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313203/suppl/GSM313203.CEL.gz
| | Sample_series_id | GSE13347
| | Sample_data_row_count | 45101
| | |
|
GSM313204 | GPL1261 |
|
FoxO4 RNAi in C2C12 cells
|
C2C12 cells
|
C2C12 cells were transfected with shRNA against FoxO4.
|
C2C12 cells grown in DMEM transfected with FoxO4 shRNA.
|
| Sample_geo_accession | GSM313204
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Aug 15 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Tjian lab
| | Sample_treatment_protocol_ch1 | C2C12 cells were transfected with shRNA against FoxO4. Different colonies were screened for the best depletion of FoxO4.
| | Sample_growth_protocol_ch1 | C2C12 cells were grown in DMEM with puromycine. All serums used were tested for cytotoxicity.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kit was used to extract total RNA.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Follow the protocol from Affymetrix.
| | Sample_hyb_protocol | Follow the protocol from Affymetrix.
| | Sample_scan_protocol | Follow the protocol from Affymetrix.
| | Sample_data_processing | Using Affymetrix GeneChip GCOS expression analysis software to process.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ping,,Hu
| | Sample_contact_email | hup@berkeley.edu
| | Sample_contact_laboratory | Tjian
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Berkeley
| | Sample_contact_address | Hearst & Oxford
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94564
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313204/suppl/GSM313204.CEL.gz
| | Sample_series_id | GSE13347
| | Sample_data_row_count | 45101
| | |
|
GSM313205 | GPL1261 |
|
FoxO3 RNAi in C2C12 cells
|
C2C12 cells
|
C2C12 cells were transfected with shRNA against FoxO3.
|
C2C12 cells grown in DMEM transfected with FoxO3 shRNA.
|
| Sample_geo_accession | GSM313205
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Aug 15 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Tjian lab
| | Sample_treatment_protocol_ch1 | C2C12 cells were transfected with shRNA against FoxO3. Different colonies were screened for the best depletion of FoxO3. .
| | Sample_growth_protocol_ch1 | C2C12 cells were grown in DMEM with puromycine. All serums used were tested for cytotoxicity.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kit was used to extract total RNA.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Follow the protocol from Affymetrix.
| | Sample_hyb_protocol | Follow the protocol from Affymetrix.
| | Sample_scan_protocol | Follow the protocol from Affymetrix.
| | Sample_data_processing | Using Affymetrix GeneChip GCOS expression analysis software to process.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ping,,Hu
| | Sample_contact_email | hup@berkeley.edu
| | Sample_contact_laboratory | Tjian
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Berkeley
| | Sample_contact_address | Hearst & Oxford
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94564
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313205/suppl/GSM313205.CEL.gz
| | Sample_series_id | GSE13347
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
