Search results for the GEO ID: GSE13353  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM337102 | GPL570 |
|
aneurysm_ruptured_rep1
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337102
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337102/suppl/GSM337102.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337103 | GPL570 |
|
aneurysm_ruptured_rep2
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337103
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337103/suppl/GSM337103.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337104 | GPL570 |
|
aneurysm_ruptured_rep3
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337104
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337104/suppl/GSM337104.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337105 | GPL570 |
|
aneurysm_ruptured_rep4
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337105
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337105/suppl/GSM337105.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337106 | GPL570 |
|
aneurysm_ruptured_rep5
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337106
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337106/suppl/GSM337106.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337107 | GPL570 |
|
aneurysm_unruptured_rep1
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337107
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337107/suppl/GSM337107.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337108 | GPL570 |
|
aneurysm_unruptured_rep2
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337108
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337108/suppl/GSM337108.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337109 | GPL570 |
|
aneurysm_ruptured_rep6
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337109
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337109/suppl/GSM337109.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337110 | GPL570 |
|
aneurysm_unruptured_rep3
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337110
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337110/suppl/GSM337110.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337111 | GPL570 |
|
aneurysm_unruptured_rep4
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337111
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337111/suppl/GSM337111.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337112 | GPL570 |
|
aneurysm_unruptured_rep5
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337112
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337112/suppl/GSM337112.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337113 | GPL570 |
|
aneurysm_unruptured_rep6
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337113
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337113/suppl/GSM337113.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337114 | GPL570 |
|
aneurysm_unruptured_rep7
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337114
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337114/suppl/GSM337114.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337115 | GPL570 |
|
aneurysm_unruptured_rep8
|
unruptured aneurysm
|
unruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337115
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337115/suppl/GSM337115.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337116 | GPL570 |
|
aneurysm_ruptured_rep7
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337116
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337116/suppl/GSM337116.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337117 | GPL570 |
|
aneurysm_ruptured_rep8
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337117
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337117/suppl/GSM337117.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337118 | GPL570 |
|
aneurysm_ruptured_rep9
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337118
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337118/suppl/GSM337118.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337119 | GPL570 |
|
aneurysm_ruptured_rep10
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337119
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337119/suppl/GSM337119.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
GSM337120 | GPL570 |
|
aneurysm_ruptured_rep11
|
ruptured aneurysm
|
ruptured aneurysm
|
no additional information
|
| Sample_geo_accession | GSM337120
| | Sample_status | Public on Dec 24 2010
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Dec 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | The samples were snap frozen in liquid nitrogen after surgical clipping from patients
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA exrtaction was performed using Trizol Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix two-cycle amplification protocol from 100 ng of RNA
| | Sample_hyb_protocol | Twenty micrograms of purified cRNA was hybridized to Human Genome U133 Plus 2.0 GeneChips (Affymetrix Inc., Santa Clara, CA). The chips were stained and washed using Affymetrix Fluidics Station 400 according to manufacturers instruction
| | Sample_scan_protocol | GeneChips where scanned using Affymetrix GeneChip Scanner 3000 according to manufacturers instructions
| | Sample_data_processing | GeneSpring implementation of RMA algorithm was used for background correction, normalization across arrays, and summarizing probe values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mitja,,Kurki
| | Sample_contact_institute | University of Eastern Finland
| | Sample_contact_address | Yliopistonranta 1 E
| | Sample_contact_city | Kuopio
| | Sample_contact_zip/postal_code | 70211
| | Sample_contact_country | Finland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337120/suppl/GSM337120.CEL.gz
| | Sample_series_id | GSE13353
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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