Search results for the GEO ID: GSE13364 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM337470 | GPL1261 |
|
CD4 Naïve
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 control
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337470
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337470/suppl/GSM337470.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337470/suppl/GSM337470.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
|
GSM337471 | GPL1261 |
|
CD4 pCONS
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 mice treated with pCONS peptide intravenously
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337471
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337471/suppl/GSM337471.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337471/suppl/GSM337471.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
|
GSM337472 | GPL1261 |
|
CD8 Naïve
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 control
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337472
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337472/suppl/GSM337472.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337472/suppl/GSM337472.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
|
GSM337473 | GPL1261 |
|
CD8 pCONS
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 mice treated with pCONS peptide intravenously
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337473
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337473/suppl/GSM337473.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337473/suppl/GSM337473.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
|
GSM337474 | GPL1261 |
|
WBC Naïve
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 control
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337474
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337474/suppl/GSM337474.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337474/suppl/GSM337474.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
|
GSM337475 | GPL1261 |
|
WBC pCONS
|
BWF1 mice spleenocytes
|
NZB/NZW BWF1 mice treated with pCONS peptide intravenously
|
Gene expression data from BWF1 mice (10-15 weeks) spleenocytes
|
Sample_geo_accession | GSM337475
| Sample_status | Public on Oct 28 2008
| Sample_submission_date | Oct 27 2008
| Sample_last_update_date | Oct 27 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | CD4, CD8, and WBC cell subsets were collected from control and pCONS treated mice spleens one week after treatment.
| Sample_growth_protocol_ch1 | BWF1 mice were treated with 1 mg of pCONs (an artifical peptide) intravenously.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| Sample_data_processing | The data were analyzed with GCOS-imbedded Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 250.
| Sample_platform_id | GPL1261
| Sample_contact_name | Ram, Pyare,Singh
| Sample_contact_email | rpsingh@mednet.ucla.edu
| Sample_contact_phone | 310-267-5749
| Sample_contact_fax | 310-206-8606
| Sample_contact_laboratory | Rheumatology/ Lupus Lab
| Sample_contact_department | Rheumatology/Medicine
| Sample_contact_institute | David Geffen School of Medicine at UCLA
| Sample_contact_address | 1000 Veteran Ave
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337475/suppl/GSM337475.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337475/suppl/GSM337475.CHP.gz
| Sample_series_id | GSE13364
| Sample_data_row_count | 45101
| |
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