Search results for the GEO ID: GSE13368  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM337550 | GPL85 |
|
Control kidney: N2
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: none
|
Gene expression data from transplanted rat kidneys (control)
|
| Sample_geo_accession | GSM337550
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337550/suppl/GSM337550.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337551 | GPL85 |
|
Control kidney: N3
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: none
|
Gene expression data from transplanted rat kidneys (control)
|
| Sample_geo_accession | GSM337551
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337551/suppl/GSM337551.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337552 | GPL85 |
|
Control kidney: N4
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: none
|
Gene expression data from transplanted rat kidneys (control)
|
| Sample_geo_accession | GSM337552
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337552/suppl/GSM337552.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337553 | GPL85 |
|
7 day Placebo: 211
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (7d post-transplantation)
|
| Sample_geo_accession | GSM337553
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337553/suppl/GSM337553.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337554 | GPL85 |
|
7 day Placebo: 213
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (7d post-transplantation)
|
| Sample_geo_accession | GSM337554
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337554/suppl/GSM337554.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337555 | GPL85 |
|
7 day Placebo: 539
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (7d post-transplantation)
|
| Sample_geo_accession | GSM337555
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337555/suppl/GSM337555.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337556 | GPL85 |
|
7 day Placebo: 540
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (7d post-transplantation)
|
| Sample_geo_accession | GSM337556
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337556/suppl/GSM337556.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337557 | GPL85 |
|
14 day Placebo: 244
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (14d post-transplantation)
|
| Sample_geo_accession | GSM337557
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337557/suppl/GSM337557.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337558 | GPL85 |
|
14 day Placebo: 246
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (14d post-transplantation)
|
| Sample_geo_accession | GSM337558
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337558/suppl/GSM337558.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337559 | GPL85 |
|
14 day Placebo: 531
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (14d post-transplantation)
|
| Sample_geo_accession | GSM337559
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337559/suppl/GSM337559.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337560 | GPL85 |
|
14 day Placebo: 546
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (14d post-transplantation)
|
| Sample_geo_accession | GSM337560
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337560/suppl/GSM337560.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337561 | GPL85 |
|
14 day Placebo: 248
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (14d post-transplantation)
|
| Sample_geo_accession | GSM337561
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337561/suppl/GSM337561.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337562 | GPL85 |
|
56 day Placebo: 572
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (56d post-transplantation)
|
| Sample_geo_accession | GSM337562
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337562/suppl/GSM337562.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337563 | GPL85 |
|
56 day Placebo: 574
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (56d post-transplantation)
|
| Sample_geo_accession | GSM337563
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337563/suppl/GSM337563.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337564 | GPL85 |
|
56 day Placebo: 592
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (56d post-transplantation)
|
| Sample_geo_accession | GSM337564
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337564/suppl/GSM337564.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337565 | GPL85 |
|
56 day Placebo: 593
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (56d post-transplantation)
|
| Sample_geo_accession | GSM337565
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337565/suppl/GSM337565.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
GSM337566 | GPL85 |
|
56 day Placebo: 587
|
transplanted kidney
|
Transplants: F344 RT1lvl
Recipients: LEW RT1l
|
Gene expression data from transplanted rat kidneys (56d post-transplantation)
|
| Sample_geo_accession | GSM337566
| | Sample_status | Public on Jan 07 2011
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Jan 07 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | transplantation protocol: Inbred male rats were purchased from Charles River Laboratories GmbH (Sulzfeld, Germany) and were used in all experiments. Kidney transplantation was performed by a modified technique originally described by Lee (1967) under general ether anaesthesia. Unlike the original model, the recipient's right kidney was left in place and no immunosuppressive agent was given, in order to enhance the contribution of rejection to CAD.
| | Sample_treatment_protocol_ch1 | Rats were not treated with any medication including Cyclosporine A.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by the method of Chomczynski and Sacci. RNA quality was characterized using a RNA6000 Nanochip (Agilent
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol. 20µg of total RNA were reverse-transcribed and used for biotinylation.
| | Sample_hyb_protocol | We used standard Affymetrix procedures for hybridization
| | Sample_scan_protocol | Reactions were performed essentially according to the Affymetrix protocol.
| | Sample_data_processing | The resultant .CEL files were analyzed using the ChipInspector software V.0.92 (CI; Genomatix Software GmbH, Munich, Germany). CI does not supply probeset signal intensitites for individual arrays. Processed log2 (placebo/control) ratio data provided as supplementary files on the Series record.
| | Sample_platform_id | GPL85
| | Sample_contact_name | Christine,,von Toerne
| | Sample_contact_email | vontoerne@helmholtz-muenchen.de
| | Sample_contact_fax | 0049-89-31873860
| | Sample_contact_laboratory | Prof. Dr. Ueffing
| | Sample_contact_department | Proteinanalytik
| | Sample_contact_institute | HelmholtzZentrum
| | Sample_contact_address | Ingoldstädter Landstraße 1
| | Sample_contact_city | Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337566/suppl/GSM337566.CEL.gz
| | Sample_series_id | GSE13368
| | Sample_series_id | GSE17045
| | Sample_data_row_count | 0
| | |
|
| |
| |
Make groups for comparisons |
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