Search results for the GEO ID: GSE13376 ![](/q11.jpeg) |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM337722 | GPL570 |
|
SKGT4_REST_4Hr_1
|
SKGT4 cells in untreated media for 4 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337722
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337722/suppl/GSM337722.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337722/suppl/GSM337722.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337723 | GPL570 |
|
SKGT4_REST_4Hr_2
|
SKGT4 cells in untreated media for 4 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337723
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337723/suppl/GSM337723.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337723/suppl/GSM337723.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337724 | GPL570 |
|
SKGT4_REST_8Hr_1
|
SKGT4 cells in untreated media for 8 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337724
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337724/suppl/GSM337724.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337724/suppl/GSM337724.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337725 | GPL570 |
|
SKGT4_REST_8Hr_2
|
SKGT4 cells in untreated media for 8 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337725
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337725/suppl/GSM337725.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337725/suppl/GSM337725.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337726 | GPL570 |
|
SKGT4_REST_12Hr_1
|
SKGT4 cells in untreated media for 12 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337726
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337726/suppl/GSM337726.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337726/suppl/GSM337726.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337727 | GPL570 |
|
SJGT4_REST_12Hr_2
|
SKGT4 cells in untreated media for 12 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337727
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337727/suppl/GSM337727.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337727/suppl/GSM337727.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337730 | GPL570 |
|
SKGT4_REST_24Hr_1
|
SKGT4 cells in untreated media for 24 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337730
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337730/suppl/GSM337730.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337730/suppl/GSM337730.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337732 | GPL570 |
|
SKGT4_REST_24Hr_2
|
SKGT4 cells in untreated media for 24 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337732
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337732/suppl/GSM337732.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337732/suppl/GSM337732.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337733 | GPL570 |
|
SKGT4_DCA_4Hr_1
|
SKGT4 cells exposed to DCA (300um) media for 4 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337733
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337733/suppl/GSM337733.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337733/suppl/GSM337733.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337735 | GPL570 |
|
SKGT4_DCA_8Hr_1
|
SKGT4 cells exposed to DCA (300um) media for 8 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337735
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337735/suppl/GSM337735.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337735/suppl/GSM337735.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337736 | GPL570 |
|
SKGT4_DCA_8Hr_2
|
SKGT4 cells exposed to DCA (300um) media for 8 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337736
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337736/suppl/GSM337736.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337736/suppl/GSM337736.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337737 | GPL570 |
|
SKGT4_DCA_12Hr_1
|
SKGT4 cells exposed to DCA (300um) media for 12 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337737
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337737/suppl/GSM337737.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337737/suppl/GSM337737.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337738 | GPL570 |
|
SKGT4_DCA_12Hr_2
|
SKGT4 cells exposed to DCA (300um) media for 12 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337738
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337738/suppl/GSM337738.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337738/suppl/GSM337738.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337739 | GPL570 |
|
SKGT4_DCA_24Hr_1
|
SKGT4 cells exposed to DCA (300um) media for 24 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337739
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337739/suppl/GSM337739.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337739/suppl/GSM337739.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM337740 | GPL570 |
|
SKGT4_DCA_24Hr_2
|
SKGT4 cells exposed to DCA (300um) media for 24 hours
|
The SKGT4 cell line is derived from the Barrett's associated adenocarcinoma of the lower esophageal epithelium and used in these experiments at passage 4.
|
RNA samples were taken at 4, 8, 12 and 24 hours from DCA (DCA) exposed and resting (REST) timepoint controls.
|
Sample_geo_accession | GSM337740
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 28 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have been exposed to deoxycholic acid (DCA) 300um for the time detailed above, in RPMI media without supplementation or fetal calf serum.
| Sample_growth_protocol_ch1 | SKGT4 cells are grown in RPMI1640 with 10% fetal calf serum and penn-step-glutamine supplementation.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value as determined at a target intensity of 100 in MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337740/suppl/GSM337740.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337740/suppl/GSM337740.CHP.gz
| Sample_series_id | GSE13376
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons ![](/q11.jpeg) |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|