Search results for the GEO ID: GSE13378 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM312550 | GPL570 |
|
HET-1A_REST 4Hr_1
|
HET-1A cells in untreated media for 4 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM312550
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | HET-1A are avliable from the ATCC biobank
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Labelled as per instructions by affymetrix.
| Sample_hyb_protocol | Hybridised as per instructions by affymetrix.
| Sample_scan_protocol | Scanned as per instructions by affymetrix at tgt 100.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312550/suppl/GSM312550.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312550/suppl/GSM312550.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM313007 | GPL570 |
|
HET-1A_REST 4Hr_2
|
HET-1A cells in untreated media for 4 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM313007
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Aug 15 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Labelled as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313007/suppl/GSM313007.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313007/suppl/GSM313007.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM313008 | GPL570 |
|
HET-1A_REST_8HR_1
|
HET-1A cells in untreated media for 8 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM313008
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Aug 15 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Labelled as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313008/suppl/GSM313008.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313008/suppl/GSM313008.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM313009 | GPL570 |
|
HET-1A_REST_8Hr_2
|
HET-1A cells in untreated media for 8 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM313009
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Aug 15 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Labelled as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313009/suppl/GSM313009.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM313nnn/GSM313009/suppl/GSM313009.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM318847 | GPL570 |
|
HET-1A_REST 12Hr_1
|
HET-1A cells in untreated media for 12 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM318847
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Sep 09 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318847/suppl/GSM318847.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318847/suppl/GSM318847.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM318857 | GPL570 |
|
HET-1A_REST 12Hr_2
|
HET-1A cells in untreated media for 12 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM318857
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Sep 09 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318857/suppl/GSM318857.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318857/suppl/GSM318857.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM318858 | GPL570 |
|
HET-1A_REST 24Hr_1
|
HET-1A cells in untreated media for 24 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM318858
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Sep 09 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318858/suppl/GSM318858.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318858/suppl/GSM318858.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM318860 | GPL570 |
|
HET-1A_REST 24Hr_2
|
HET-1A cells in untreated media for 24 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM318860
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Sep 09 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | These cells have not been treated and are used as a biological time point control for experiments involving exposure of these cells to carcinogens over time.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318860/suppl/GSM318860.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318860/suppl/GSM318860.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336627 | GPL570 |
|
HET-1A_DCA_24Hr_1
|
HET-1A cells exposed to 300um DCA for 24 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336627
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336627/suppl/GSM336627.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336627/suppl/GSM336627.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336629 | GPL570 |
|
HET-1A_DCA_24Hr_2
|
HET-1A cells exposed to 300um DCA for 24 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336629
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336629/suppl/GSM336629.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336629/suppl/GSM336629.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336630 | GPL570 |
|
HET-1A_DCA_12Hr_1
|
HET-1A cells exposed to 300um DCA for 12 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336630
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336630/suppl/GSM336630.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336630/suppl/GSM336630.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336631 | GPL570 |
|
HET-1A_DCA_12Hr_2
|
HET-1A cells exposed to 300um DCA for 12 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336631
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336631/suppl/GSM336631.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336631/suppl/GSM336631.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336632 | GPL570 |
|
HET-1A_DCA_8Hr_1
|
HET-1A cells exposed to 300um DCA for 8 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336632
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336632/suppl/GSM336632.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336632/suppl/GSM336632.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336633 | GPL570 |
|
HET-1A_DCA_8Hr_2
|
HET-1A cells exposed to 300um DCA for 8 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336633
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336633/suppl/GSM336633.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336633/suppl/GSM336633.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336634 | GPL570 |
|
HET-1A_DCA_4Hr_1
|
HET-1A cells exposed to 300um DCA for 4 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336634
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336634/suppl/GSM336634.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336634/suppl/GSM336634.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
GSM336635 | GPL570 |
|
HET-1A_DCA_4Hr_2
|
HET-1A cells exposed to 300um DCA for 4 hours
|
The HET-1A cell line is derived from the normal squamous esophageal epithelium and used in these experiments at passage 4.
|
HET-1A cells were exposed to 300um DCA over 24 hours in duplicate experiments including matched timepoint controls
|
Sample_geo_accession | GSM336635
| Sample_status | Public on Feb 20 2010
| Sample_submission_date | Oct 24 2008
| Sample_last_update_date | Nov 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were exposed to DCA 300um in media without supplementation.
| Sample_growth_protocol_ch1 | HET-1A cells are grown in bronchial epithelial base medium (BEBM) with supplementation as described by the American Tissue Culture Collection (ATCC).
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using Machery-Nagel RNA extraction spin columns.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | as per instructions by affymetrix.
| Sample_hyb_protocol | as per instructions by affymetrix.
| Sample_scan_protocol | as per instructions by affymetrix.
| Sample_data_processing | Value data was derived through transformations in GCOS/MAS5 at a target intensity of 100
| Sample_platform_id | GPL570
| Sample_contact_name | Shane,P,Duggan
| Sample_contact_email | shduggan@tcd.ie
| Sample_contact_phone | 0035318963273
| Sample_contact_fax | 0035318963503
| Sample_contact_laboratory | Rm 1.16
| Sample_contact_department | Clinical Medicine
| Sample_contact_institute | Institute of Molecular Medicine
| Sample_contact_address | TCD Health Sciences Building, St James Hospital,
| Sample_contact_city | Dublin
| Sample_contact_zip/postal_code | Dublin 8
| Sample_contact_country | Ireland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336635/suppl/GSM336635.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM336nnn/GSM336635/suppl/GSM336635.CHP.gz
| Sample_series_id | GSE13378
| Sample_series_id | GSE13400
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|