Search results for the GEO ID: GSE13381  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM337710 | GPL1355 |
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Beta_cells_1
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Beta_cells_1
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beta cells purity >87%
FACS-purified rat beta cells
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Beta_cells_1
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| Sample_geo_accession | GSM337710
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337710/suppl/GSM337710.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
| | |
|
GSM337711 | GPL1355 |
|
Beta_cells_2
|
Beta_cells_2
|
beta cells purity >87%
FACS-purified rat beta cells
|
Beta_cells_2
|
| Sample_geo_accession | GSM337711
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337711/suppl/GSM337711.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
| | |
|
GSM337712 | GPL1355 |
|
INS_cells_1
|
INS_cells_1
|
clonal INS cells
Cultured insulinoma cell lines
|
INS_cells_1
|
| Sample_geo_accession | GSM337712
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337712/suppl/GSM337712.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
| | |
|
GSM337713 | GPL1355 |
|
INS_cells_2
|
INS_cells_2
|
clonal INS cells
Cultured insulinoma cell lines
|
INS_cells_2
|
| Sample_geo_accession | GSM337713
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337713/suppl/GSM337713.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
| | |
|
GSM337714 | GPL1355 |
|
Alpha_cells_1
|
Alpha_cells_1
|
non-beta cells containing <3% beta cells
FACS-purified rat non-beta cells
|
Alpha_cells_1
|
| Sample_geo_accession | GSM337714
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337714/suppl/GSM337714.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
| | |
|
GSM337715 | GPL1355 |
|
Alpha_cells_2
|
Alpha_cells_2
|
non-beta cells containing <3% beta cells
FACS-purified rat non-beta cells
|
Alpha_cells_2
|
| Sample_geo_accession | GSM337715
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Oct 27 2008
| | Sample_last_update_date | Oct 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | INS-1 cells were cultured in complete medium and collected for analysis after 48h. Primary rat beta-cells (>87% beta-cells) and non-beta-cells (<3% beta cells, mostly alpha) were isolated by FACS mediated purification of two different rat islet preparations.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix
| | Sample_hyb_protocol | Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
| | Sample_scan_protocol | Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
| | Sample_data_processing | Raw CEL intensity data were GCRMA normalized using R/Bioconductor
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Burak,,Kutlu
| | Sample_contact_email | bkutlu@systemsbiology.org
| | Sample_contact_phone | 206-732-1200
| | Sample_contact_institute | Institute for Systems Biology
| | Sample_contact_address | 1441 North 34th Street
| | Sample_contact_city | Seattle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM337nnn/GSM337715/suppl/GSM337715.CEL.gz
| | Sample_series_id | GSE13381
| | Sample_data_row_count | 31099
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