Search results for the GEO ID: GSE13385  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM338151 | GPL1261 |
|
D1_IP1: Drd1a Medium spiny neurons, dissected mouse striatum.
|
Drd1a Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd1a, Line: CP73, Region: striatum
|
D1_IP1
|
| Sample_geo_accession | GSM338151
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338151/suppl/GSM338151.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338152 | GPL1261 |
|
D1_IP2: Drd1a Medium spiny neurons, dissected mouse striatum.
|
Drd1a Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd1a, Line: CP73, Region: striatum
|
D1_IP2
|
| Sample_geo_accession | GSM338152
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338152/suppl/GSM338152.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338153 | GPL1261 |
|
D1_IP3: Drd1a Medium spiny neurons, dissected mouse striatum.
|
Drd1a Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd1a, Line: CP73, Region: striatum
|
D1_IP3
|
| Sample_geo_accession | GSM338153
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338153/suppl/GSM338153.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338154 | GPL1261 |
|
D2_IP1: Drd2 Medium spiny neurons, dissected mouse striatum.
|
Drd2 Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd2, Line: CP101, Region: striatum
|
D2_IP1
|
| Sample_geo_accession | GSM338154
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338154/suppl/GSM338154.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338155 | GPL1261 |
|
D2_IP2: Drd2 Medium spiny neurons, dissected mouse striatum.
|
Drd2 Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd2, Line: CP101, Region: striatum
|
D2_IP2
|
| Sample_geo_accession | GSM338155
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338155/suppl/GSM338155.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338156 | GPL1261 |
|
D2_IP3: Drd2 Medium spiny neurons, dissected mouse striatum.
|
Drd2 Medium spiny neurons, dissected mouse striatum
|
TRAP RNA
Driver: Drd2, Line: CP101, Region: striatum
|
D2_IP3
|
| Sample_geo_accession | GSM338156
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338156/suppl/GSM338156.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338157 | GPL1261 |
|
WB1: Whole mouse brain lacking striatum.
|
Whole mouse brain lacking striatum
|
Total RNA
Whole mouse brain lacking striatum
|
WB1
|
| Sample_geo_accession | GSM338157
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338157/suppl/GSM338157.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338158 | GPL1261 |
|
WB2: Whole mouse brain lacking striatum.
|
Whole mouse brain lacking striatum
|
Total RNA
Whole mouse brain lacking striatum
|
WB2
|
| Sample_geo_accession | GSM338158
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338158/suppl/GSM338158.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
|
GSM338159 | GPL1261 |
|
WB3: Whole mouse brain lacking striatum.
|
Whole mouse brain lacking striatum
|
Total RNA
Whole mouse brain lacking striatum
|
WB3
|
| Sample_geo_accession | GSM338159
| | Sample_status | Public on Nov 14 2008
| | Sample_submission_date | Oct 28 2008
| | Sample_last_update_date | Oct 29 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (IP, see accompanying manuscript) or total homogenized tissue (WB), followed by Trizol-LS extraction, DNAse treatment, and RNeasy-Minelute Cleanup.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform.
| | Sample_data_processing | In Genespring GX 7.3.1, GCRMA normalization was performed within the two biological replicate groups (IP and WB), and expression values on each chip were further normalized to the expression values of several positive control genes and to a constant value of 0.01.
| | Sample_data_processing | Using the Limma package from Bioconductor project, data were converted to log2 scale.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nathaniel,,Heintz
| | Sample_contact_email | heintz@rockefeller.edu
| | Sample_contact_institute | HHMI/Rockefeller University
| | Sample_contact_address | 1230 York Ave, Box 260
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM338nnn/GSM338159/suppl/GSM338159.CEL.gz
| | Sample_series_id | GSE13385
| | Sample_series_id | GSE13394
| | Sample_data_row_count | 45101
| | |
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