Search results for the GEO ID: GSE13496 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM339908 | GPL96 |
|
34BM0030
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 18 yo Male
Same .CEL file as GSM239170
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339908
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339908/suppl/GSM339908.CEL.gz
| Sample_relation | Reanalysis of: GSM239170
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339948 | GPL96 |
|
34BM0121
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 51 yo Male
.CEL file is identical to GSM239338
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339948
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339948/suppl/GSM339948.CEL.gz
| Sample_relation | Reanalysis of: GSM239338
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339952 | GPL96 |
|
34BM2249
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 23 yo Female.
.CEL file is identical to GSM239340
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339952
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339952/suppl/GSM339952.CEL.gz
| Sample_relation | Reanalysis of: GSM239340
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339956 | GPL96 |
|
34BM2523
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 16 yo Male.
.CEL file is identical to GSM239341
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339956
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339956/suppl/GSM339956.CEL.gz
| Sample_relation | Reanalysis of: GSM239341
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339957 | GPL96 |
|
34BM2841
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 36 yo Male.
.CEL file is identical to GSM239342
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339957
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339957/suppl/GSM339957.CEL.gz
| Sample_relation | Reanalysis of: GSM239342
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339958 | GPL96 |
|
34BM2854
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 18 yo Male.
.CEL file is identical to GSM239343
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339958
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339958/suppl/GSM339958.CEL.gz
| Sample_relation | Reanalysis of: GSM239343
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339959 | GPL96 |
|
34BM3077
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 32 yo Male.
.CEL file is identical to GSM239344
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339959
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339959/suppl/GSM339959.CEL.gz
| Sample_relation | Reanalysis of: GSM239344
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339990 | GPL96 |
|
34BM3488
|
CD34 selected bone marrow
|
CD34 selected cells from cadaveric bone marrow of 23 yo Male.
.CEL file is identical to GSM239339
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339990
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339990/suppl/GSM339990.CEL.gz
| Sample_relation | Reanalysis of: GSM239339
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339991 | GPL96 |
|
34P38NPBSC000485
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC of 53 yo Male.
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339991
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339991/suppl/GSM339991.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339992 | GPL96 |
|
34P38NPBSC000497
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC of 27 yo Male.
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339992
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339992/suppl/GSM339992.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339993 | GPL96 |
|
TO600025
|
Expanded T-cells
|
Expanded T-cells from 85 yo Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339993
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339993/suppl/GSM339993.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339997 | GPL96 |
|
34P38NPBSC000500
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC of 51 yo Male.
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339997
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339997/suppl/GSM339997.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339998 | GPL96 |
|
34P38NPBSC000513
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC
|
CD34 positive CD38 negative cells from G-CSF mobilized PBSC of 22 yo male.
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339998
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339998/suppl/GSM339998.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM339999 | GPL96 |
|
TO600071
|
Expanded T-cells
|
Expanded T-cells from 76 yo Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM339999
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339999/suppl/GSM339999.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340000 | GPL96 |
|
TO600318
|
Expanded T-cells
|
Expanded T-cells from 81 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340000
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340000/suppl/GSM340000.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340001 | GPL96 |
|
TO600042
|
Expanded T-cells
|
Expanded T-cells from 83 yo Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340001
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340001/suppl/GSM340001.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340002 | GPL96 |
|
TO600380
|
Expanded T-cells
|
Expanded T-cells from 75 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340002
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340002/suppl/GSM340002.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340003 | GPL96 |
|
TO600571
|
Expanded T-cells
|
Expanded T-cells from 86 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340003
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340003/suppl/GSM340003.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340004 | GPL96 |
|
TO600428
|
Expanded T-cells
|
Expanded T-cells from 77 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340004
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340004/suppl/GSM340004.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340005 | GPL96 |
|
TO600599
|
Expanded T-cells
|
Expanded T-cells from 74 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340005
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340005/suppl/GSM340005.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340006 | GPL96 |
|
TO600799
|
Expanded T-cells
|
Expanded T-cells from 82 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340006
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340006/suppl/GSM340006.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340007 | GPL96 |
|
TO600649
|
Expanded T-cells
|
Expanded T-cells from 84 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340007
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340007/suppl/GSM340007.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340008 | GPL96 |
|
TY27949B
|
Expanded T-cells
|
Expanded T-cells from 26 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340008
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340008/suppl/GSM340008.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340009 | GPL96 |
|
TY041035
|
Expanded T-cells
|
Expanded T-cells from 21 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340009
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340009/suppl/GSM340009.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340010 | GPL96 |
|
TY040085
|
Expanded T-cells
|
Expanded T-cells from 23 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340010
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340010/suppl/GSM340010.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340011 | GPL96 |
|
TYPCA0715
|
Expanded T-cells
|
Expanded T-cells from 23 Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340011
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340011/suppl/GSM340011.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340012 | GPL96 |
|
TYPCA0941
|
Expanded T-cells
|
Expanded T-cells from 23 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340012
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340012/suppl/GSM340012.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340013 | GPL96 |
|
TY51128
|
Expanded T-cells
|
Expanded T-cells from 30 yo Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340013
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life Technologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340013/suppl/GSM340013.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340014 | GPL96 |
|
TYPCA1011
|
Expanded T-cells
|
Expanded T-cells from 24 yo Female
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340014
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340014/suppl/GSM340014.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
|
GSM340015 | GPL96 |
|
TYPCA1077
|
Expanded T-cells
|
Expanded T-cells from 21 yo Male
|
For 34BM and T-cells, biotin-labeling of total RNA (5 µg) was performed as per standard Affymetrix protocol. For the 34P38NPBSC arrays, the single-stranded linear amplification protocol was used to process total RNA (100 nanograms) for the microarrays. Both protocols are described in detail in PMID14706461.
|
Sample_geo_accession | GSM340015
| Sample_status | Public on Dec 01 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA extracted using TRIzol reagent (Invitrogen, Carlsbad, CA)according to manufacturer's protocol.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Target was labeled with Enzo BioArray High Yield RNA Trascript Labeling Kit (Enzo Life TEchnologies, Farmingdale, NY) according to manufacturer's protocol.
| Sample_hyb_protocol | Hybridization was performed according to Affymetrix protocol.
| Sample_scan_protocol | Arrays were scanned according to Affymetrix protocol.
| Sample_data_processing | .DAT files were generated using GCOS 1.2.1 software (Affymetrix). CEL files were generated using MAS 5.0 softare (Affymetrix) with target signals for probe sets scaled to 500. Log2 expression values for individual probe sets were generated from .CEL files via robust multi-array average (gcRMA).
| Sample_platform_id | GPL96
| Sample_contact_name | Derek,L,Stirewalt
| Sample_contact_email | dstirewa@fhcrc.org
| Sample_contact_laboratory | Stirewalt Lab
| Sample_contact_department | Clinical Research Division
| Sample_contact_institute | Fred Hutchinson Cancer Research Center
| Sample_contact_address | 1100 Fairview Ave N, D5-112
| Sample_contact_city | Seattle
| Sample_contact_state | WA
| Sample_contact_zip/postal_code | 98109
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM340nnn/GSM340015/suppl/GSM340015.CEL.gz
| Sample_series_id | GSE13496
| Sample_data_row_count | 22283
| |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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