Search results for the GEO ID: GSE13538  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM341316 | GPL1355 |
|
Control, 0 hrs 4OHT Biol Rep1
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341316
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341316/suppl/GSM341316.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341317 | GPL1355 |
|
Control, 1 hrs 4OHT, Biol Rep1
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341317
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341317/suppl/GSM341317.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341318 | GPL1355 |
|
Control, 2.5 hrs 4OHT, Biol Rep1
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341318
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341318/suppl/GSM341318.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341319 | GPL1355 |
|
MEF2-VP16-ER, 0 hrs 4OHT, Biol Rep1
|
Hippocampal neurons, MEF2-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341319
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341319/suppl/GSM341319.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341320 | GPL1355 |
|
MEF2-VP16-ER, 1 hrs 4OHT, Biol Rep1
|
Hippocampal neurons, MEF2-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341320
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341320/suppl/GSM341320.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341321 | GPL1355 |
|
MEF2-VP16-ER, 2.5 hrs 4OHT, Biol Rep1
|
Hippocampal neurons, MEF2-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341321
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341321/suppl/GSM341321.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341322 | GPL1355 |
|
Control, 0 hrs 4OHT Biol Rep2
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341322
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341322/suppl/GSM341322.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341323 | GPL1355 |
|
Control, 1 hrs 4OHT, Biol Rep2
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341323
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341323/suppl/GSM341323.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341324 | GPL1355 |
|
Control, 2.5 hrs 4OHT, Biol Rep2
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341324
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341324/suppl/GSM341324.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341325 | GPL1355 |
|
MEF2-VP16-ER, 0 hrs 4OHT, Biol Rep2
|
Hippocampal neurons, MEF2-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341325
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341325/suppl/GSM341325.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341326 | GPL1355 |
|
MEF2-VP16-ER, 1 hrs 4OHT, Biol Rep2
|
Hippocampal neurons, MEF2-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341326
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341326/suppl/GSM341326.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341327 | GPL1355 |
|
MEF2-VP16-ER, 2.5 hrs 4OHT, Biol Rep2
|
Hippocampal neurons, MEF2-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341327
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341327/suppl/GSM341327.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341328 | GPL1355 |
|
Control, 0 hrs 4OHT Biol Rep3
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341328
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341328/suppl/GSM341328.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341329 | GPL1355 |
|
Control, 1 hrs 4OHT, Biol Rep3
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341329
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341329/suppl/GSM341329.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341330 | GPL1355 |
|
Control, 2.5 hrs 4OHT, Biol Rep3
|
Hippocampal neurons, MEF2deltaDBD-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341330
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341330/suppl/GSM341330.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341331 | GPL1355 |
|
MEF2-VP16-ER, 0 hrs 4OHT, Biol Rep3
|
Hippocampal neurons, MEF2-VP16-ER, 0 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341331
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341331/suppl/GSM341331.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341332 | GPL1355 |
|
MEF2-VP16-ER, 1 hrs 4OHT, Biol Rep3
|
Hippocampal neurons, MEF2-VP16-ER, 1 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341332
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341332/suppl/GSM341332.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
GSM341333 | GPL1355 |
|
MEF2-VP16-ER, 2.5 hrs 4OHT, Biol Rep3
|
Hippocampal neurons, MEF2-VP16-ER, 2.5 hours 4OHT
|
n/a
|
Expression profiling in hippocampal neurons to identify activity-regulated genes controlled by MEF2
|
| Sample_geo_accession | GSM341333
| | Sample_status | Public on Jan 12 2009
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Jan 10 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | On day in vitro 3, neurons were transduced with lentiviruses expressing either either control MEF2deltaDBD-VP16-ER or MEF2-VP16-ER. On day in vitro 10, 4OHT was applied for 0, 1 or 2.5 hours.
| | Sample_growth_protocol_ch1 | Hippocampal neurons were grown in dissociated culture for 10 days in vitro.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy Micro Kit from Qiagen
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| | Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| | Sample_scan_protocol | Standard Affymetrix scanning procedures.
| | Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Steven,Willem,Flavell
| | Sample_contact_email | steven.flavell@tch.harvard.edu
| | Sample_contact_laboratory | Michael E. Greenberg
| | Sample_contact_department | Neurology
| | Sample_contact_institute | Children's Hospital Boston
| | Sample_contact_address | CLS 12260, 300 Longwood Avenue
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341333/suppl/GSM341333.CEL.gz
| | Sample_series_id | GSE13538
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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