Search results for the GEO ID: GSE13539 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM341334 | GPL1355 |
|
Control animal, animal #1
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341334
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341334/suppl/GSM341334.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341335 | GPL1355 |
|
Control animal, animal #2
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341335
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341335/suppl/GSM341335.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341336 | GPL1355 |
|
Control animal, animal #3
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341336
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341336/suppl/GSM341336.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341337 | GPL1355 |
|
Control animal, animal #4
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341337
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341337/suppl/GSM341337.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341338 | GPL1355 |
|
Control animal, animal #5
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341338
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341338/suppl/GSM341338.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341339 | GPL1355 |
|
Control animal, animal #6
|
Rat forebrain, control condition
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341339
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341339/suppl/GSM341339.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341340 | GPL1355 |
|
Animal exposed to novel environment, animal #1
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341340
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341340/suppl/GSM341340.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341341 | GPL1355 |
|
Animal exposed to novel environment, animal #2
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341341
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341341/suppl/GSM341341.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341342 | GPL1355 |
|
Animal exposed to novel environment, animal #3
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341342
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341342/suppl/GSM341342.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341343 | GPL1355 |
|
Animal exposed to novel environment, animal #4
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341343
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341343/suppl/GSM341343.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341344 | GPL1355 |
|
Animal exposed to novel environment, animal #5
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341344
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341344/suppl/GSM341344.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
|
GSM341345 | GPL1355 |
|
Animal exposed to novel environment, animal #6
|
Rat forebrain, after three hours exposure to novel environment
|
n/a
|
Expression profiling to identify genes upregulated in response to exposure to a novel environment
|
Sample_geo_accession | GSM341345
| Sample_status | Public on Jan 12 2009
| Sample_submission_date | Nov 10 2008
| Sample_last_update_date | Jan 10 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Six animals were moved into a novel environment containing objects of different shapes and colors for three hours
| Sample_growth_protocol_ch1 | Six-week old, male Long Evans rats were housed individually for several days
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by RNEasy Mini Cleanup
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA prepared according to standard Affymetrix procedures
| Sample_hyb_protocol | Standard Affymetrix hybridization procedures.
| Sample_scan_protocol | Standard Affymetrix scanning procedures.
| Sample_data_processing | Raw CEL files were normalized using RMAexpress.
| Sample_platform_id | GPL1355
| Sample_contact_name | Steven,Willem,Flavell
| Sample_contact_email | steven.flavell@tch.harvard.edu
| Sample_contact_laboratory | Michael E. Greenberg
| Sample_contact_department | Neurology
| Sample_contact_institute | Children's Hospital Boston
| Sample_contact_address | CLS 12260, 300 Longwood Avenue
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02115
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341345/suppl/GSM341345.CEL.gz
| Sample_series_id | GSE13539
| Sample_data_row_count | 31099
| |
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