Search results for the GEO ID: GSE13550 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM339919 | GPL1355 |
|
KJ_Dam2_GD20_Testis_Oil
|
testis exposed to oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.01
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Pooled from Multiple Samples: Yes
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam2_GD20_Testis_Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339919
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: corn oil, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_treatment_protocol_ch1 | Treatment_2: in vivo Treatment: corn oil, Treatment Repeat: Daily, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339919/suppl/GSM339919.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339920 | GPL1355 |
|
KJ_Dam3_GD20_Testis_Oil
|
testis exposed to oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.00
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam3_GD20_Testis_Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339920
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: corn oil, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_treatment_protocol_ch1 | Treatment_2: in vivo Treatment: corn oil, Treatment Repeat: Daily, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339920/suppl/GSM339920.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339921 | GPL1355 |
|
KJ_Dam16_GD20_Testis_DBP
|
testis exposed to DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.96
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam16_GD20_Testis_DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339921
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Dibutyl Phthalate, Treatment Repeat: Daily, Treatment Duration: GD12-20, Treatment Time: Dam was sacrificed 6 hr after last DBP dosing, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339921/suppl/GSM339921.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339922 | GPL1355 |
|
KJ_Dam18_GD20_Testis_DBP
|
testis exposed to DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.95
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam18_GD20_Testis_DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339922
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Dibutyl Phthalate, Treatment Repeat: Daily, Treatment Duration: GD12-20, Treatment Time: Dam was sacrificed 6 hr after last DBP dosing, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339922/suppl/GSM339922.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339923 | GPL1355 |
|
KJ_Dam19_GD20_Testis_DBP
|
testis exposed to DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.99
RNA Integrity Number: 8.6
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam19_GD20_Testis_DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339923
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Dibutyl Phthalate, Treatment Repeat: Daily, Treatment Duration: GD12-20, Treatment Time: Dam was sacrificed 6 hr after last DBP dosing, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339923/suppl/GSM339923.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339924 | GPL1355 |
|
KJ_Dam21_GD20_Testis_DBP
|
testis exposed to DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.01
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam21_GD20_Testis_DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339924
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Dibutyl Phthalate, Treatment Repeat: Daily, Treatment Duration: GD12-20, Treatment Time: Dam was sacrificed 6 hr after last DBP dosing, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339924/suppl/GSM339924.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339925 | GPL1355 |
|
KJ_Dam4_GD20_Testis_Oil
|
testis exposed to oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.99
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam4_GD20_Testis_Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339925
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: corn oil, Treatment Repeat: Daily, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339925/suppl/GSM339925.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339926 | GPL1355 |
|
KJ_Dam5_GD20_Testis_Oil
|
testis exposed to oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.99
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Gestational Day 20
Sacrifice Method: carbon dioxide
Sex: male
Age: 20
Units of Age: Gestation Day
Genetic Modifications: none
Disease State: none
|
KJ_Dam5_GD20_Testis_Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339926
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: corn oil, Treatment Repeat: Daily, Treatment Duration: GD12-20, Route of Exposure: Oral Gavage of Dam
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Micro Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339926/suppl/GSM339926.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339927 | GPL1355 |
|
KJ_Pup#104_PND35_Testis_Oil-Oil
|
testis exposed to oil-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.5
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#104_PND35_Testis_Oil-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339927
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily Corn Oil from GD12-20 via dam and single corn oil gavage at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Clean up
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339927/suppl/GSM339927.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339928 | GPL1355 |
|
KJ_Pup#105_PND35_Testis_Oil-DBP
|
testis exposed to oil-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.5
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#105_PND35_Testis_Oil-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339928
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily corn oil from GD12-20 via dam and single 500 mg/kg dibutyl phthalate exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 500 , Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339928/suppl/GSM339928.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339929 | GPL1355 |
|
KJ_Pup#110_PND35_Testis_Oil-Oil
|
testis exposed to oil-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.03
RNA Integrity Number: 8.2
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#110_PND35_Testis_Oil-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339929
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily Corn Oil from GD12-20 via dam and single corn oil gavage at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339929/suppl/GSM339929.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339930 | GPL1355 |
|
KJ_Pup#111_PND35_Testis_Oil-DBP
|
testis exposed to oil-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#111_PND35_Testis_Oil-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339930
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily corn oil from GD12-20 via dam and single 500 mg/kg dibutyl phthalate exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 500 , Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339930/suppl/GSM339930.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339931 | GPL1355 |
|
KJ_Pup#114_PND35_Testis_Oil-Oil
|
testis exposed to oil-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.01
RNA Integrity Number: 8.6
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#114_PND35_Testis_Oil-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339931
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily Corn Oil from GD12-20 via dam and single corn oil gavage at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339931/suppl/GSM339931.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339932 | GPL1355 |
|
KJ_Pup#115_PND35_Testis_Oil-DBP
|
testis exposed to oil-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.7
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#115_PND35_Testis_Oil-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339932
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily corn oil from GD12-20 via dam and single 500 mg/kg dibutyl phthalate exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 500 , Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: Trizol
| Sample_extract_protocol_ch1 | Additional Purification Method: Qiagen Clean up
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339932/suppl/GSM339932.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339933 | GPL1355 |
|
KJ_Pup#120_PND35_Testis_Oil-Oil
|
testis exposed to oil-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 1.98
RNA Integrity Number: 8.4
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#120_PND35_Testis_Oil-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339933
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily Corn Oil from GD12-20 via dam and single corn oil gavage at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339933/suppl/GSM339933.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339934 | GPL1355 |
|
KJ_Pup#121_PND35_Testis_Oil-DBP
|
testis exposed to oil-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.04
RNA Integrity Number: 8.5
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#121_PND35_Testis_Oil-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339934
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily corn oil from GD12-20 via dam and single 500 mg/kg dibutyl phthalate exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 500 , Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339934/suppl/GSM339934.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339935 | GPL1355 |
|
KJ_Pup#123_PND35_Testis_DBP-Oil
|
testis exposed to DBP-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.03
RNA Integrity Number: 8.6
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#123_PND35_Testis_DBP-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339935
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily dibutyl phthalate from GD12-20 via dam and single corn oil exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339935/suppl/GSM339935.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339936 | GPL1355 |
|
KJ_Pup#124_PND35_Testis_DBP-DBP
|
testis exposed to DBP-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.5
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#124_PND35_Testis_DBP-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339936
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily 50 mg/kg dibutyl phthalate from GD12-20 via dam and single 500 mg/kg DBP at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50 and 500, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339936/suppl/GSM339936.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339937 | GPL1355 |
|
KJ_Pup#127_PND35_Testis_DBP-Oil
|
testis exposed to DBP-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.03
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#127_PND35_Testis_DBP-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339937
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily dibutyl phthalate from GD12-20 via dam and single corn oil exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339937/suppl/GSM339937.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339938 | GPL1355 |
|
KJ_Pup#128_PND35_Testis_DBP-DBP
|
testis exposed to DBP-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.04
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#128_PND35_Testis_DBP-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339938
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily 50 mg/kg dibutyl phthalate from GD12-20 via dam and single 500 mg/kg DBP at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50 and 500, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339938/suppl/GSM339938.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339939 | GPL1355 |
|
KJ_Pup#132_PND35_Testis_DBP-Oil
|
testis exposed to DBP-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.03
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#132_PND35_Testis_DBP-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339939
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily dibutyl phthalate from GD12-20 via dam and single corn oil exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339939/suppl/GSM339939.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339940 | GPL1355 |
|
KJ_Pup#133_PND35_Testis_DBP-DBP
|
testis exposed to DBP-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.04
RNA Integrity Number: 8.9
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#133_PND35_Testis_DBP-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339940
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily 50 mg/kg dibutyl phthalate from GD12-20 via dam and single 500 mg/kg DBP at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50 and 500, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339940/suppl/GSM339940.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339941 | GPL1355 |
|
KJ_Pup#134_PND35_Testis_DBP-Oil
|
testis exposed to DBP-oil
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.02
RNA Integrity Number: 8.9
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#134_PND35_Testis_DBP-Oil_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339941
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily dibutyl phthalate from GD12-20 via dam and single corn oil exposure at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339941/suppl/GSM339941.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
|
GSM339942 | GPL1355 |
|
KJ_Pup#135_PND35_Testis_DBP-DBP
|
testis exposed to DBP-DBP
|
Sample Type: Tissue, Tissue: none, Tissue Harvest Methods: Tissue was excised from animal, detunicated, and snap frozen prior to RNA isolation.
Array Type: Rat230_2
Ratio: 2.00
RNA Integrity Number: 8.8
Bioanalyzer Results: good
Sample Preservation: Snap Frozen
Strain or Line: Fisher 344
NCBI Taxonomy ID: 10116
Developmental State: Peripubertal
Sacrifice Method: carbon dioxide
Sex: male
Age: 35
Units of Age: Postnatal Day
Genetic Modifications: none
Disease State: none
|
KJ_Pup#135_PND35_Testis_DBP-DBP_Rat230_2_KJ_CIIT06012: Pregnant Fisher 344 rats will be purchased from Charles River Laboratories, Inc. and delivered to CIIT on gestational day (GD) 7 (GD0 = day first vaginal plug positive). At gestational day 12 (GD12), the dams will be exposed once/day until GD20 to 50 mg/kg dibutyl phthalate (DBP) in corn oil vehicle via oral gavage. Each dose group will contain 4-6 vehicle control or phthalate treated dams. Groups of animals will be sacrificed at GD20, postnatal day (PND) 35, and PND90 for endpoint analysis. At GD20, treated and control animals will be examined for various endpoints including body weight, testicular histopathology, gene expression profile via microarray analysis, and anogenital distance (AGD). AGD (at parturition; PND1) and nipple number/location (at PND14 and day of sacrifice) will be determined on animals in the postnatal groups. At PND35 or 90, one male from each in utero corn oil vehicle or DBP exposed group will receive a second gavage of either corn oil or 500 mg/kg DBP. 6 hours after the second gavage, the following endpoints will be examined: 1) testis histopathology; 2) spermatid head quantification (PND90 only); 3) testis and body weights; 5) genome-wide gene expression (via microarray); and 6) germ cell apoptosis (TUNEL assay).
|
Sample_geo_accession | GSM339942
| Sample_status | Public on Nov 24 2008
| Sample_submission_date | Nov 05 2008
| Sample_last_update_date | Nov 10 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | Duncan Wallace, CIIT Centers for Health Research, 6 Davis Drive, Research Triangle Park, NC, 27709, Kamin Johnson, kjohnson@ciit.org, 919-558-1439
| Sample_treatment_protocol_ch1 | in vivo Treatment: Daily 50 mg/kg dibutyl phthalate from GD12-20 via dam and single 500 mg/kg DBP at PND35, Treatment Duration: GD12-20 and PND35, Treatment Time: sacrificed 6 hr after last exposure, Vehicle for Chemical: Corn Oil, Route of Exposure: Oral Gavage of Dam during Gestation and Oral Gavage at PND35, Dose or Concentration: 50 and 500, Units of Dose or Concentration: mg/kg
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Extraction Method: RNAlater follwed by Qiagen AllPrep DNA/RNA Mini Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | standard Affymetrix protocol
| Sample_hyb_protocol | standard Affymetrix procedures
| Sample_scan_protocol | standard Affymetrix procedures
| Sample_data_processing | Affymetrix GCOS 1.0
| Sample_platform_id | GPL1355
| Sample_contact_name | Longlong,,Yang
| Sample_contact_email | lyang@ciit.org
| Sample_contact_phone | 919-558-1374
| Sample_contact_institute | CIIT Centers for Health Research
| Sample_contact_address | 6 Davis Dr.
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27709
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM339nnn/GSM339942/suppl/GSM339942.CEL.gz
| Sample_series_id | GSE13550
| Sample_data_row_count | 31099
| |
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