Search results for the GEO ID: GSE13553  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM257459 | GPL1261 |
|
Exp 2773_control
|
mouse fed control chow
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257460 | GPL1261 |
|
Exp 2879_control
|
mouse fed control chow
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257461 | GPL1261 |
|
Exp 2880_control
|
mouse fed control chow
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257462 | GPL1261 |
|
Exp 2775_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257464 | GPL1261 |
|
Exp 2877_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257466 | GPL1261 |
|
Exp 2878_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM257467 | GPL1261 |
|
Exp 2876_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
|
|
GSM341443 | GPL1261 |
|
Exp 2968_control
|
mouse fed control chow
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
| Sample_geo_accession | GSM341443
| | Sample_status | Public on Nov 19 2008
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Nov 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratories (Bay Harbor, ME)
| | Sample_treatment_protocol_ch1 | PyV-MT expressing female mice were fed a diet supplemented with 1% conjugated linoleic acid or control chow for 4 weeks. Animals were euthanized at 8 weeks of age and mammary glands were collected for RNA processing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mammary glands were collected according to standard necropsis procedures. Tissue was stored in RNAlater (Sigma, St. Louis, MO) until processing. RNA was obtained using Qiagen RNeasy (Valencia CA) and stored in -80 degrees Celsius.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocols
| | Sample_hyb_protocol | Affymetrix standard protocols
| | Sample_scan_protocol | Scanning Hardware: Affymetrix 3000 scanner
| | Sample_scan_protocol | Software: GCOS, manufacturer's recommended settings
| | Sample_data_processing | MAS 5.0 standard processing protocols and settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Margaret,,Flowers
| | Sample_contact_email | flowersm@jwci.org
| | Sample_contact_phone | 520-626-7781
| | Sample_contact_department | Dept of Experimental Therapeutics
| | Sample_contact_institute | John Wayne Cancer Institute
| | Sample_contact_address | 2200 Santa Monica Blvd.
| | Sample_contact_city | Santa Monica
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90404
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341443/suppl/GSM341443.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341443/suppl/GSM341443.CHP.gz
| | Sample_series_id | GSE13553
| | Sample_data_row_count | 45101
| | |
|
GSM341444 | GPL1261 |
|
Exp 2971_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
| Sample_geo_accession | GSM341444
| | Sample_status | Public on Nov 19 2008
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Nov 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratories (Bay Harbor, ME)
| | Sample_treatment_protocol_ch1 | PyV-MT expressing female mice were fed a diet supplemented with 1% conjugated linoleic acid or control chow for 4 weeks. Animals were euthanized at 8 weeks of age and mammary glands were collected for RNA processing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mammary glands were collected according to standard necropsis procedures. Tissue was stored in RNAlater (Sigma, St. Louis, MO) until processing. RNA was obtained using Qiagen RNeasy (Valencia CA) and stored in -80 degrees Celsius.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocols
| | Sample_hyb_protocol | Affymetrix standard protocols
| | Sample_scan_protocol | Scanning Hardware: Affymetrix 3000 scanner
| | Sample_scan_protocol | Software: GCOS, manufacturer's recommended settings
| | Sample_data_processing | MAS 5.0 standard processing protocols and settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Margaret,,Flowers
| | Sample_contact_email | flowersm@jwci.org
| | Sample_contact_phone | 520-626-7781
| | Sample_contact_department | Dept of Experimental Therapeutics
| | Sample_contact_institute | John Wayne Cancer Institute
| | Sample_contact_address | 2200 Santa Monica Blvd.
| | Sample_contact_city | Santa Monica
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90404
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341444/suppl/GSM341444.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341444/suppl/GSM341444.CHP.gz
| | Sample_series_id | GSE13553
| | Sample_data_row_count | 45101
| | |
|
GSM341445 | GPL1261 |
|
Exp 2970_CLA
|
mouse fed 1% CLA
|
Strain: FVB/PyV-Mt
Age: 8 weeks
Sex: Female
Parity: No
Tissue: Mammary gland
|
Mammary gland, virgin, 8 wk.
|
| Sample_geo_accession | GSM341445
| | Sample_status | Public on Nov 19 2008
| | Sample_submission_date | Nov 10 2008
| | Sample_last_update_date | Nov 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Jackson Laboratories (Bay Harbor, ME)
| | Sample_treatment_protocol_ch1 | PyV-MT expressing female mice were fed a diet supplemented with 1% conjugated linoleic acid or control chow for 4 weeks. Animals were euthanized at 8 weeks of age and mammary glands were collected for RNA processing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Mammary glands were collected according to standard necropsis procedures. Tissue was stored in RNAlater (Sigma, St. Louis, MO) until processing. RNA was obtained using Qiagen RNeasy (Valencia CA) and stored in -80 degrees Celsius.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocols
| | Sample_hyb_protocol | Affymetrix standard protocols
| | Sample_scan_protocol | Scanning Hardware: Affymetrix 3000 scanner
| | Sample_scan_protocol | Software: GCOS, manufacturer's recommended settings
| | Sample_data_processing | MAS 5.0 standard processing protocols and settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Margaret,,Flowers
| | Sample_contact_email | flowersm@jwci.org
| | Sample_contact_phone | 520-626-7781
| | Sample_contact_department | Dept of Experimental Therapeutics
| | Sample_contact_institute | John Wayne Cancer Institute
| | Sample_contact_address | 2200 Santa Monica Blvd.
| | Sample_contact_city | Santa Monica
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90404
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341445/suppl/GSM341445.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341445/suppl/GSM341445.CHP.gz
| | Sample_series_id | GSE13553
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
