Search results for the GEO ID: GSE13582  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM341691 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (KO1)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
KO1-BAT
|
| Sample_geo_accession | GSM341691
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341691/suppl/GSM341691.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341691/suppl/GSM341691.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
GSM341692 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (KO2)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
KO2-BAT
|
| Sample_geo_accession | GSM341692
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341692/suppl/GSM341692.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341692/suppl/GSM341692.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
GSM341693 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (KO3)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
KO3-BAT
|
| Sample_geo_accession | GSM341693
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341693/suppl/GSM341693.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341693/suppl/GSM341693.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
GSM341694 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (WT1)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
WT1-BAT
|
| Sample_geo_accession | GSM341694
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341694/suppl/GSM341694.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341694/suppl/GSM341694.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
GSM341695 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (WT2)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
WT2-BAT
|
| Sample_geo_accession | GSM341695
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341695/suppl/GSM341695.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341695/suppl/GSM341695.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
GSM341696 | GPL1261 |
|
Expression data from BAT of the KRAP deficient mice (WT3)
|
brown adipose tissue
|
C57BL6J-backcrossed, male
|
WT3-BAT
|
| Sample_geo_accession | GSM341696
| | Sample_status | Public on Jan 22 2009
| | Sample_submission_date | Nov 13 2008
| | Sample_last_update_date | Jan 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA followed by purification using Rneasy kit was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software (GCOS) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | takahiro,,fujimoto
| | Sample_contact_email | tfujimoto@fukuoka-u.ac.jp
| | Sample_contact_department | Faculty of medicine,Department of cell biology
| | Sample_contact_institute | fukuoka university
| | Sample_contact_address | 7-45-1 nanakuma,jonan-ku
| | Sample_contact_city | Fukuoka
| | Sample_contact_state | Fukuoka
| | Sample_contact_zip/postal_code | 814-0180
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341696/suppl/GSM341696.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM341nnn/GSM341696/suppl/GSM341696.CHP.gz
| | Sample_series_id | GSE13582
| | Sample_series_id | GSE13585
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
