Search results for the GEO ID: GSE13597 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM342152 | GPL96 |
|
Normal control 1
|
biopsy of non-malignant nasopharyngeal control
|
disease state: Normal
|
Non-malignant control
|
Sample_geo_accession | GSM342152
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342152/suppl/GSM342152.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342152/suppl/GSM342152.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342153 | GPL96 |
|
Normal control 2
|
biopsy of non-malignant nasopharyngeal control
|
disease state: Normal
|
Non-malignant control
|
Sample_geo_accession | GSM342153
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342153/suppl/GSM342153.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342153/suppl/GSM342153.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342154 | GPL96 |
|
Normal control 3
|
biopsy of non-malignant nasopharyngeal control
|
disease state: Normal
|
Non-malignant control
|
Sample_geo_accession | GSM342154
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342154/suppl/GSM342154.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342154/suppl/GSM342154.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342155 | GPL96 |
|
NPC1
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342155
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342155/suppl/GSM342155.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342155/suppl/GSM342155.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342156 | GPL96 |
|
NPC2
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVC, T4, N3, M1, G4
|
Stage IVC, T4, N3, M1, G4
|
Sample_geo_accession | GSM342156
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342156/suppl/GSM342156.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342156/suppl/GSM342156.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342157 | GPL96 |
|
NPC3
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342157
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342157/suppl/GSM342157.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342157/suppl/GSM342157.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342158 | GPL96 |
|
NPC4
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IIB, T1, N1, M0, G4
|
Stage IIB, T1, N1, M0, G4
|
Sample_geo_accession | GSM342158
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342158/suppl/GSM342158.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342158/suppl/GSM342158.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342159 | GPL96 |
|
NPC5
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: II, T2, N0, M0, G4
|
Stage II, T2, N0, M0, G4
|
Sample_geo_accession | GSM342159
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342159/suppl/GSM342159.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342159/suppl/GSM342159.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342160 | GPL96 |
|
NPC6
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T3, N2, M0, G4
|
Stage III, T3, N2, M0, G4
|
Sample_geo_accession | GSM342160
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342160/suppl/GSM342160.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342160/suppl/GSM342160.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342161 | GPL96 |
|
NPC7
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVB, T3, N3, G4
|
Stage IVB, T3, N3, , G4
|
Sample_geo_accession | GSM342161
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342161/suppl/GSM342161.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342161/suppl/GSM342161.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342162 | GPL96 |
|
NPC8
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342162
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342162/suppl/GSM342162.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342162/suppl/GSM342162.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342163 | GPL96 |
|
NPC9
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IIB, T2, N1, M0, G4
|
Stage IIB, T2, N1, M0, G4
|
Sample_geo_accession | GSM342163
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342163/suppl/GSM342163.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342163/suppl/GSM342163.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342164 | GPL96 |
|
NPC10
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVB, T3, N3, M0, G4
|
Stage IVB, T3, N3, M0, G4
|
Sample_geo_accession | GSM342164
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342164/suppl/GSM342164.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342164/suppl/GSM342164.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342165 | GPL96 |
|
NPC11
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVB, T4, N3, M0, G4
|
Stage IVB, T4, N3, M0, G4
|
Sample_geo_accession | GSM342165
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342165/suppl/GSM342165.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342165/suppl/GSM342165.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342166 | GPL96 |
|
NPC12
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IIB, T1, N0, M0, G4
|
Stage IIB, T1, N0, M0, G4
|
Sample_geo_accession | GSM342166
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342166/suppl/GSM342166.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342166/suppl/GSM342166.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342167 | GPL96 |
|
NPC13
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T1, N2, M0, G4
|
Stage III, T1, N2, M0, G4
|
Sample_geo_accession | GSM342167
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342167/suppl/GSM342167.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342167/suppl/GSM342167.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342168 | GPL96 |
|
NPC14
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342168
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342168/suppl/GSM342168.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342168/suppl/GSM342168.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342169 | GPL96 |
|
NPC15
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342169
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342169/suppl/GSM342169.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342169/suppl/GSM342169.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342170 | GPL96 |
|
NPC16
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T2, N2, M0, G4
|
Stage III, T2, N2, M0, G4
|
Sample_geo_accession | GSM342170
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Nov 25 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342170/suppl/GSM342170.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342170/suppl/GSM342170.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342171 | GPL96 |
|
NPC17
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T3, N2, M0, G4
|
Stage III, T3, N2, M0, G4
|
Sample_geo_accession | GSM342171
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Nov 25 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342171/suppl/GSM342171.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342171/suppl/GSM342171.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342172 | GPL96 |
|
NPC18
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVB, T3, N2, M0, G4
|
Stage IVB, T3, N2, M0, G4
|
Sample_geo_accession | GSM342172
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342172/suppl/GSM342172.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342172/suppl/GSM342172.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342173 | GPL96 |
|
NPC19
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IVA, T4, N2b, M0, G4
|
Stage IVA, T4, N2b, M0, G4
|
Sample_geo_accession | GSM342173
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342173/suppl/GSM342173.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342173/suppl/GSM342173.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342174 | GPL96 |
|
NPC20
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: IIB, T2, N1, M0, G4
|
Stage IIB, T2, N1, M0, G4
|
Sample_geo_accession | GSM342174
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342174/suppl/GSM342174.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342174/suppl/GSM342174.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342175 | GPL96 |
|
NPC21
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: I, T1, N0, M0, G4
|
Stage I, T1, N0, M0, G4
|
Sample_geo_accession | GSM342175
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342175/suppl/GSM342175.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342175/suppl/GSM342175.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342176 | GPL96 |
|
NPC22
|
biopsy of undifferentiated NPC
|
disease state: Nasopharyngeal carcinoma
stage: III, T1, N2, M0, G4
|
Stage III, T1, N2, M0, G4
|
Sample_geo_accession | GSM342176
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342176/suppl/GSM342176.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342176/suppl/GSM342176.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
|
GSM342177 | GPL96 |
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NPC23
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biopsy of undifferentiated NPC
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disease state: Nasopharyngeal carcinoma
stage: IVA, T4, N2, M0, G4
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Stage IVA, T4, N2, M0, G4
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Sample_geo_accession | GSM342177
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342177/suppl/GSM342177.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342177/suppl/GSM342177.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
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GSM342178 | GPL96 |
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NPC24
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biopsy of undifferentiated NPC
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disease state: Nasopharyngeal carcinoma
stage: IVB, T2, N3, M0, G4
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Stage IVB, T2, N3, M0, G4
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Sample_geo_accession | GSM342178
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342178/suppl/GSM342178.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342178/suppl/GSM342178.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
| |
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GSM342179 | GPL96 |
|
NPC25
|
biopsy of undifferentiated NPC
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disease state: Nasopharyngeal carcinoma
stage: IVA, T4, N2, M0, G4
|
Stage IVA, T4, N2, M0, G4
|
Sample_geo_accession | GSM342179
| Sample_status | Public on Nov 03 2009
| Sample_submission_date | Nov 13 2008
| Sample_last_update_date | Mar 29 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from biopsy samples using TRIzol Reagent (Invitrogen, USA) and purified by the RNeasy Mini Kit (Qiagen, UK).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | The cDNA was synthesized, in vitro transcribed and labeled using standard Affymetrix protocols.
| Sample_hyb_protocol | Affymetrix Standard protocol
| Sample_scan_protocol | Affymetrix Standard protocol
| Sample_data_processing | The scanned images of microarray chips were analyzed using the Affymetrix GenChip Operating Software (GCOS) with the default settings except that the target signal was set to 100.
| Sample_platform_id | GPL96
| Sample_contact_name | Wenbin,,Wei
| Sample_contact_email | w.wei@bham.ac.uk
| Sample_contact_phone | +44-121-4143293
| Sample_contact_laboratory | Bioinformatics
| Sample_contact_department | School of Cancer Sciences
| Sample_contact_institute | University of Birmingham
| Sample_contact_address | Vincent Drive
| Sample_contact_city | Edgbaston
| Sample_contact_state | West Midlands
| Sample_contact_zip/postal_code | B15 2TT
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342179/suppl/GSM342179.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM342nnn/GSM342179/suppl/GSM342179.CHP.gz
| Sample_series_id | GSE13597
| Sample_data_row_count | 22283
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