Search results for the GEO ID: GSE1364 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM22051 | GPL96 |
|
E1_T2_R1, Spheroid, no storage
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22051
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22051/suppl/GSM22051.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22051/suppl/GSM22051.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22052 | GPL96 |
|
E1_T2_R2, Spheroid, no storage
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22052
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22052/suppl/GSM22052.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22052/suppl/GSM22052.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22053 | GPL96 |
|
E1_T2_R3, Spheroid, no storage
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22053
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22053/suppl/GSM22053.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22053/suppl/GSM22053.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22054 | GPL96 |
|
E1_T3_R1, two week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 2 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22054
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22054/suppl/GSM22054.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22054/suppl/GSM22054.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22055 | GPL96 |
|
E1_T3_R2, two week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 2 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22055
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22055/suppl/GSM22055.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22055/suppl/GSM22055.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22056 | GPL96 |
|
E1_T3_R3, two week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 2 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22056
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22056/suppl/GSM22056.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22056/suppl/GSM22056.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22057 | GPL96 |
|
E1_T4_R1, two week storage/full recovery
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: 2 wk dry storage
time: 72 hr recovery
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22057
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22057/suppl/GSM22057.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22057/suppl/GSM22057.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22058 | GPL96 |
|
E1_T4_R2, two week storage/full recovery
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: 2 wk dry storage
time: 72 hr recovery
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22058
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22058/suppl/GSM22058.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22058/suppl/GSM22058.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22059 | GPL96 |
|
E1_T4_R3, two week storage/full recovery
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: 2 wk dry storage
time: 72 hr recovery
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22059
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22059/suppl/GSM22059.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22059/suppl/GSM22059.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22060 | GPL96 |
|
E1_T5_R1, four week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 4 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22060
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22060/suppl/GSM22060.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22060/suppl/GSM22060.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22061 | GPL96 |
|
E1_T5_R2, four week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 4 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22061
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22061/suppl/GSM22061.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22061/suppl/GSM22061.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22062 | GPL96 |
|
E1_T5_R3, four week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 4 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22062
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22062/suppl/GSM22062.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22062/suppl/GSM22062.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22063 | GPL96 |
|
E1_T6_R1, six week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 6 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22063
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22063/suppl/GSM22063.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22063/suppl/GSM22063.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22064 | GPL96 |
|
E1_T6_R2, six week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 6 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22064
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22064/suppl/GSM22064.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22064/suppl/GSM22064.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22065 | GPL96 |
|
E1_T6_R3, six week storage/0hr recovery
|
Kidney 293 HEK Cells
|
cell type: 3-D spheroid
stress: 6 wk dry storage
time: 0 h recovery
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22065
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22065/suppl/GSM22065.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22065/suppl/GSM22065.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22066 | GPL96 |
|
E1_T7_R1, Control, monolayer, antibiotics
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22066
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22066/suppl/GSM22066.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22066/suppl/GSM22066.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22067 | GPL96 |
|
E1_T7_R2, Control, monolayer, antibiotics
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22067
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22067/suppl/GSM22067.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22067/suppl/GSM22067.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22068 | GPL96 |
|
E1_T7_R3, Control, monolayer, antibiotics
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): yes
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22068
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22068/suppl/GSM22068.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22068/suppl/GSM22068.dat.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22069 | GPL96 |
|
E1_T1_R1, Control, monolayer
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22069
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22069/suppl/GSM22069.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22069/suppl/GSM22069.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22070 | GPL96 |
|
E1_T1_R2, Control, monolayer
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22070
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22070/suppl/GSM22070.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22070/suppl/GSM22070.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
GSM22071 | GPL96 |
|
E1_T1_R3, Control, monolayer
|
Kidney 293 HEK Cells
|
cell type: 2-D monolayer
stress: no dry storage
time: n/a
antibiotics (yes or no?): no
|
1x10^7 Human embryonic kidney cell spheroids were grown for 7 days in suspension over agarose prepared with FBS supplemented DMEM containing 50mM HEPES, pH 7.2, and 1xGlutamax-1 (Invitrogen).
Following growth, media was removed and the spheroids were stored on the surface of the agarose in sealed flasks for 2,4, and 6 week intervals at room temperature in the dark.
The samples were compared against unstored controls of both spheroids and monolayer (at 30-40% confluence)samples. All samples were conducted in triplicate.
For each storage timepoint, a set of unrehydrated samples were analyzed, and an additional set of rehydrated samples were analyzed after allowing for growth in a treated tissue culture flask, to assess how well the samples returned to a normal, pre-storage state.
Rehydration was conducted with DMEM (Invitrogen) containing 20%FBS and antibiotics (100U penicillin, 100ug/mL streptomycin, and 0.25ug Fungizone), with HEPES and Glutamax as stated previously.
|
Sample_geo_accession | GSM22071
| Sample_status | Public on Aug 01 2005
| Sample_submission_date | May 04 2004
| Sample_last_update_date | Mar 07 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_platform_id | GPL96
| Sample_contact_name | Richard,F.,Helm
| Sample_contact_email | helmrf@vt.edu
| Sample_contact_phone | 540-231-4088
| Sample_contact_fax | 540-231-9070
| Sample_contact_laboratory | Virginia Tech Center for Genomics
| Sample_contact_department | Biochemistry, Fralin Biotechnology Center
| Sample_contact_institute | Virginia Polytechnic Institute and State University
| Sample_contact_address | West Campus Drive
| Sample_contact_city | Blacksburg
| Sample_contact_state | VA
| Sample_contact_zip/postal_code | 24061
| Sample_contact_country | USA
| Sample_contact_web_link | http://vigen.biochem.vt.edu
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22071/suppl/GSM22071.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM22nnn/GSM22071/suppl/GSM22071.DAT.gz
| Sample_series_id | GSE1364
| Sample_data_row_count | 22283
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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