Search results for the GEO ID: GSE13671 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM343834 | GPL570 |
|
BRCA1 carrier (dupl) sample 3a
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343834
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343834/suppl/GSM343834.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343835 | GPL570 |
|
Control (dupl) sample 4a
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343835
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343835/suppl/GSM343835.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343836 | GPL570 |
|
BRCA1 carrier sample 8
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343836
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343836/suppl/GSM343836.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343837 | GPL570 |
|
Control (dupl) sample 6a
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343837
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343837/suppl/GSM343837.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343838 | GPL570 |
|
Control (dupl) sample 6b
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343838
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343838/suppl/GSM343838.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343839 | GPL570 |
|
BRCA1 carrier sample 7
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343839
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343839/suppl/GSM343839.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343840 | GPL570 |
|
BRCA1 carrier (dupl) sample 2a
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343840
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343840/suppl/GSM343840.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343841 | GPL570 |
|
BRCA1 carrier (dupl) sample 2b
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343841
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343841/suppl/GSM343841.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343842 | GPL570 |
|
Control (dupl) sample 4b
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343842
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343842/suppl/GSM343842.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343843 | GPL570 |
|
Control (dupl) sample 5a
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343843
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343843/suppl/GSM343843.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343844 | GPL570 |
|
Control (dupl) sample 5b
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343844
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343844/suppl/GSM343844.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343845 | GPL570 |
|
Control (dupl) sample 1a
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343845
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343845/suppl/GSM343845.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343846 | GPL570 |
|
Control (dupl) sample 1b
|
Breast epithelial cells from normal controls
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343846
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343846/suppl/GSM343846.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
GSM343847 | GPL570 |
|
BRCA1 carrier (dupl) sample 3b
|
Breast epithelial cells from BCRA1 mutation carrier
|
Breast epithelial cells
|
The arrays included duplicates from four normal controls and from two BRCA1 mutation carriers and single arrays from another two BRCA1 mutation carriers
|
Sample_geo_accession | GSM343847
| Sample_status | Public on Nov 20 2008
| Sample_submission_date | Nov 19 2008
| Sample_last_update_date | Nov 19 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted using the Absolutely RNA Nanoprep kit, Stratagene
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix standard protocol
| Sample_hyb_protocol | Affymetrix standard protocol
| Sample_scan_protocol | Affymetrix standard protocol
| Sample_data_processing | The data were analyzed using the gene set comparison tool of BRB-ArrayTools 3.6 (NCI)
| Sample_platform_id | GPL570
| Sample_contact_name | Panagiotis,,Konstantinopoulos
| Sample_contact_email | pkonstan@bidmc.harvard.edu
| Sample_contact_department | Hematology/Oncology
| Sample_contact_institute | Beth Israel Deaconess Medical Center
| Sample_contact_address | 3 Blackfan Circle
| Sample_contact_city | Boston
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02215
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM343nnn/GSM343847/suppl/GSM343847.CEL.gz
| Sample_series_id | GSE13671
| Sample_data_row_count | 54675
| |
|
|
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