Search results for the GEO ID: GSE13692  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM344299 | GPL1261 |
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MLL-AF10 LEUKEMIC SPLENOCYTES_CD117NEG_948
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MLL-AF10 leukemic splenocytes, CD117neg
|
MLL-AF10 leukemic splenocytes
Mouse 948
CD117neg
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344299
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344299/suppl/GSM344299.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344300 | GPL1261 |
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MLL-AF10 LEUKEMIC SPLENOCYTES_CD117POS_948
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MLL-AF10 leukemic splenocytes, CD117pos
|
MLL-AF10 leukemic splenocytes
Mouse 948
CD117pos
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344300
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344300/suppl/GSM344300.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344301 | GPL1261 |
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MLL-AF10 LEUKEMIC SPLENOCYTES_CD117NEG_951
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MLL-AF10 leukemic splenocytes, CD117neg
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MLL-AF10 leukemic splenocytes
Mouse 951
CD117neg
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344301
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344301/suppl/GSM344301.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
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GSM344302 | GPL1261 |
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MLL-AF10 LEUKEMIC SPLENOCYTES_CD117POS_951
|
MLL-AF10 leukemic splenocytes, CD117pos
|
MLL-AF10 leukemic splenocytes
Mouse 951
CD117pos
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344302
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344302/suppl/GSM344302.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344303 | GPL1261 |
|
MLL-AF10 LEUKEMIC SPLENOCYTES_CD117NEG_952
|
MLL-AF10 leukemic splenocytes, CD117neg
|
MLL-AF10 leukemic splenocytes
Mouse 952
CD117neg
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344303
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344303/suppl/GSM344303.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344305 | GPL1261 |
|
MLL-AF10 LEUKEMIC SPLENOCYTES_CD117POS_952
|
MLL-AF10 leukemic splenocytes, CD117pos
|
MLL-AF10 leukemic splenocytes
Mouse 952
CD117pos
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344305
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344305/suppl/GSM344305.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344306 | GPL1261 |
|
MLL-AF10 LEUKEMIC SPLENOCYTES_CD117NEG_953
|
MLL-AF10 leukemic splenocytes, CD117neg
|
MLL-AF10 leukemic splenocytes
Mouse 953
CD117neg
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344306
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344306/suppl/GSM344306.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
| | |
|
GSM344307 | GPL1261 |
|
MLL-AF10 LEUKEMIC SPLENOCYTES_CD117POS_953
|
MLL-AF10 leukemic splenocytes, CD117pos
|
MLL-AF10 leukemic splenocytes
Mouse 953
CD117pos
|
MLL-AF10 leukemic splenocytes were FACS sorted for high or low level c-kit expression. AML was initiated by transplantation of retrovirally transduced immortalized c-kit+ BM stem and progenitor cells into sub-lethally irradiated syngeneic CD57BL/6 recipients.
|
| Sample_geo_accession | GSM344307
| | Sample_status | Public on Feb 06 2009
| | Sample_submission_date | Nov 20 2008
| | Sample_last_update_date | Dec 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was prepared using an RNeasy Mini kit (Qiagen). RNA quality was confirmed using an Agilent 2100 bioanalyzer (Agilent Technologies). RNA was amplified using a GeneChip Two-Cycle Target Labeling and Control Reagents kit (Affymetrix).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | GeneChip IVT Labeling Kit (Affymetrix)
| | Sample_hyb_protocol | GeneChip Hybridization Control Kit (Affymetrix)
| | Sample_scan_protocol | Hybridized chips were scanned using the GeneChip Scanner 3000, with GeneChip operating software (v1.1.1) (Affymetrix)
| | Sample_data_processing | All normalizations and data set comparisons were performed using dChip 2007 (DNA-Chip Analyzer) software (Li and Wong, 2001; biosun1.harvard.edu/complab/dchip/manual.htm). A perfect-match/mismatch (PM/MM) model was used for the calculation of expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Tim,C,Somervaille
| | Sample_contact_email | tsomervaille@picr.man.ac.uk
| | Sample_contact_institute | Paterson Institute for Cancer Research
| | Sample_contact_address | Wilmslow Road
| | Sample_contact_city | Manchester
| | Sample_contact_zip/postal_code | M20 4BX
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344307/suppl/GSM344307.CEL.gz
| | Sample_series_id | GSE13692
| | Sample_series_id | GSE13796
| | Sample_data_row_count | 45101
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