Search results for the GEO ID: GSE13715  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM344813 | GPL570 |
|
NP cells 2D before differentiation rep1
|
Neural progenitor cells without differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344813
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344813/suppl/GSM344813.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344814 | GPL570 |
|
NP cells 2D before differentiation rep2
|
Neural progenitor cells without differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344814
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344814/suppl/GSM344814.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344815 | GPL570 |
|
NP cells 2D before differentiation rep3
|
Neural progenitor cells without differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344815
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344815/suppl/GSM344815.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344816 | GPL570 |
|
NP cells 2D before differentiation rep4
|
Neural progenitor cells without differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344816
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344816/suppl/GSM344816.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344817 | GPL570 |
|
NP cells 3D before differentiation rep1
|
Neural progenitor cells without differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344817
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344817/suppl/GSM344817.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344818 | GPL570 |
|
NP cells 3D before differentiation rep2
|
Neural progenitor cells without differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344818
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344818/suppl/GSM344818.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344820 | GPL570 |
|
NP cells 3D before differentiation rep4
|
Neural progenitor cells without differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344820
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344820/suppl/GSM344820.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344821 | GPL570 |
|
NP cells 2D after differentiation rep1
|
Neural progenitor cells 7 days into differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344821
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344821/suppl/GSM344821.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344822 | GPL570 |
|
NP cells 2D after differentiation rep2
|
Neural progenitor cells 7 days into differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344822
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344822/suppl/GSM344822.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344823 | GPL570 |
|
NP cells 2D after differentiation rep3
|
Neural progenitor cells 7 days into differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344823
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344823/suppl/GSM344823.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344824 | GPL570 |
|
NP cells 2D after differentiation rep4
|
Neural progenitor cells 7 days into differentiation cultured on 2D petri dishes
|
Neural progenitor cells cultured on 2D
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344824
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344824/suppl/GSM344824.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344825 | GPL570 |
|
NP cells 3D after differentiation rep1
|
Neural progenitor cells 7 days into differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344825
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344825/suppl/GSM344825.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344826 | GPL570 |
|
NP cells 3D after differentiation rep2
|
Neural progenitor cells 7 days into differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344826
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344826/suppl/GSM344826.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344828 | GPL570 |
|
NP cells 3D after differentiation rep4
|
Neural progenitor cells 7 days into differentiation cultured in 3D polystyrene scaffolds
|
Neural progenitor cells cultured in 3D scaffolds
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344828
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344828/suppl/GSM344828.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344829 | GPL570 |
|
NP cells neural sphere rep1
|
Neural progenitor cells cultured as neural spheres
|
Neural sphere cultured NP cells as in vivo surrogate
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344829
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344829/suppl/GSM344829.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344830 | GPL570 |
|
NP cells neural sphere rep2
|
Neural progenitor cells cultured as neural spheres
|
Neural sphere cultured NP cells as in vivo surrogate
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344830
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344830/suppl/GSM344830.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344831 | GPL570 |
|
NP cells neural sphere rep3
|
Neural progenitor cells cultured as neural spheres
|
Neural sphere cultured NP cells as in vivo surrogate
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344831
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344831/suppl/GSM344831.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
GSM344832 | GPL570 |
|
NP cells neural sphere rep4
|
Neural progenitor cells cultured as neural spheres
|
Neural sphere cultured NP cells as in vivo surrogate
|
Gene expression data from cultured human neural progenitor cells
|
| Sample_geo_accession | GSM344832
| | Sample_status | Public on Dec 23 2009
| | Sample_submission_date | Nov 24 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Differentiation Medium was used to replace ordinary growth medium to induce differentiation. The composition of both media can be found in millipore standard protocol
| | Sample_growth_protocol_ch1 | Human Progenitor cells were cultured as standard protocol from Millipore
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by RNAeasy mini kit (Qiagen) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | The standard hybridization protocol from Affymetrix was followed
| | Sample_scan_protocol | Arrays were scanned at high resolution using an Affymetrix GeneChip Scanner 3000 located at Medical College of Georgia Microarray Core Facility (Augusta, GA)
| | Sample_data_processing | The data were analyzed with Gene Expression Console using Affymetrix default Plier analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | William,,Kisaalita
| | Sample_contact_email | williamk@engr.uga.edu
| | Sample_contact_phone | 7065420835
| | Sample_contact_institute | University of Georgia
| | Sample_contact_address | Dritmier Engineering Center
| | Sample_contact_city | Athens
| | Sample_contact_state | GA
| | Sample_contact_zip/postal_code | 30605
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM344nnn/GSM344832/suppl/GSM344832.CEL.gz
| | Sample_series_id | GSE13715
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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