Search results for the GEO ID: GSE13805  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM347150 | GPL1261 |
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Wild type mouse embryonic stem cell, biological rep1
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Wild type mouse embryonic stem cells
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Strain: D3, mouse embryonic stem cell
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Gene expression data from wild type murine embryonic stem cells
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| Sample_geo_accession | GSM347150
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347150/suppl/GSM347150.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347151 | GPL1261 |
|
Wild type mouse embryonic stem cell, biological rep2
|
Wild type mouse embryonic stem cells
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from wild type murine embryonic stem cells
|
| Sample_geo_accession | GSM347151
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347151/suppl/GSM347151.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347152 | GPL1261 |
|
CRT knockout mouse embryonic stem cell, biological rep1
|
Calreticulin knockout of mouse embryonic stem cell line
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from murine embryonic stem cells with calreticulin deficiency
|
| Sample_geo_accession | GSM347152
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347152/suppl/GSM347152.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347153 | GPL1261 |
|
CRT knockout mouse embryonic stem cell, biological rep2
|
Calreticulin knockout of mouse embryonic stem cell line
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from murine embryonic stem cells with calreticulin deficiency
|
| Sample_geo_accession | GSM347153
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347153/suppl/GSM347153.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347154 | GPL1261 |
|
CRT knockout mouse embryonic stem cell, biological rep3
|
Calreticulin knockout of mouse embryonic stem cell line
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from murine embryonic stem cells with calreticulin deficiency
|
| Sample_geo_accession | GSM347154
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347154/suppl/GSM347154.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347155 | GPL1261 |
|
CRT knockout mouse embryonic stem cell, biological rep4
|
Calreticulin knockout of mouse embryonic stem cell line
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from murine embryonic stem cells with calreticulin deficiency
|
| Sample_geo_accession | GSM347155
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347155/suppl/GSM347155.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
| | |
|
GSM347156 | GPL1261 |
|
CRT knockout mouse embryonic stem cell, biological rep5
|
Calreticulin knockout of mouse embryonic stem cell line
|
Strain: D3, mouse embryonic stem cell
|
Gene expression data from murine embryonic stem cells with calreticulin deficiency
|
| Sample_geo_accession | GSM347156
| | Sample_status | Public on Dec 02 2009
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Dec 03 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix 430 2.0 Mouse Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Randolph,,Faustino
| | Sample_contact_email | faustino.randolph@mayo.edu
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347156/suppl/GSM347156.CEL.gz
| | Sample_series_id | GSE13805
| | Sample_data_row_count | 45101
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