Search results for the GEO ID: GSE13869  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM349023 | GPL1261 |
|
Retina wt/wt rep1
|
retina at age PN40
|
disease state: wild type
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349023
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349023/suppl/GSM349023.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349024 | GPL1261 |
|
Retina ko/wt rep1
|
retina at age PN40
|
disease state: heterozygous Nxnl1 null
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349024
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349024/suppl/GSM349024.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349025 | GPL1261 |
|
Retina ko/ko rep1
|
retina at age PN40
|
disease state: homozygous Nxnl1 null
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349025
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349025/suppl/GSM349025.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349026 | GPL1261 |
|
Retina wt/wt rep2
|
retina at age PN40
|
disease state: wild type
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349026
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349026/suppl/GSM349026.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349027 | GPL1261 |
|
Retina ko/wt rep2
|
retina at age PN40
|
disease state: heterozygous Nxnl1 null
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349027
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349027/suppl/GSM349027.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349028 | GPL1261 |
|
Retina ko/ko rep2
|
retina at age PN40
|
disease state: homozygous Nxnl1 null
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349028
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349028/suppl/GSM349028.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349029 | GPL1261 |
|
Retina wt/wt rep3
|
retina at age PN40
|
disease state: wild type
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349029
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349029/suppl/GSM349029.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
| | |
|
GSM349030 | GPL1261 |
|
Retina ko/ko rep3
|
retina at age PN40
|
disease state: homozygous Nxnl1 null
strain: BALB/c AJ
|
retina free of retinal pigment epithelium (RPE)
|
| Sample_geo_accession | GSM349030
| | Sample_status | Public on Jan 24 2010
| | Sample_submission_date | Dec 08 2008
| | Sample_last_update_date | Mar 29 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were housed under a 12 h light/12 h dark cycle and ad-lib access to food and water. Animals were sacrificed by cervical dislocation.
| | Sample_growth_protocol_ch1 | Animals were grown until post-natal day 40.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Retinal tissue was dissected free of retinal pigment epithelium (RPE) and placed in guanidine HCL. The samples were subsequently disrupted and homogenized using a rotor–stator (Polytron PT2100). Total RNA used for microarray studies was purified from a caesium chloride gradient produced by high-speed ultra-centrifugation.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2007, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Wolfgang,,Raffelsberger
| | Sample_contact_email | w.raffelsberger@unistra.fr
| | Sample_contact_laboratory | LBGI
| | Sample_contact_department | DBGS
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1 rue Laurent Fries
| | Sample_contact_city | Illkirch/Strasbourg
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349030/suppl/GSM349030.CEL.gz
| | Sample_series_id | GSE13869
| | Sample_data_row_count | 45101
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