Search results for the GEO ID: GSE13908 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM349880 | GPL1261 |
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colonic epithelial cells - wild type mice
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colonic epithelial cells of wild type mice
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strain C57Bl/6, 7-9 weeks old, colon
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Proximal colon of 4 C57/Bl6 mice were collected. Tissue sectioned and laser capture microscopy was performed using a Zeiss/Palm laser capture system.
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Sample_geo_accession | GSM349880
| Sample_status | Public on Sep 04 2009
| Sample_submission_date | Dec 10 2008
| Sample_last_update_date | Jan 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Appr. 16 000 epithelial cells were collected by laser capture microscopy (Zeiss system).
| Sample_extract_protocol_ch1 | Total RNA was extracted from the catapulted samples using RNA microprep kit (Stratagene). Fourty ng total RNA was expanded by two rounds of in vitro cRNA amplification
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols by core facility
| Sample_hyb_protocol | Standard Affymetrix protocols by core facility
| Sample_scan_protocol | Standard Affymetrix protocols by core facility
| Sample_data_processing | Array data analysis was performed using dCHIP2004 software by user
| Sample_platform_id | GPL1261
| Sample_contact_name | Knut,,Kotarsky
| Sample_contact_email | Knut.Kotarsky@med.lu.se
| Sample_contact_laboratory | Mucosal Immunology
| Sample_contact_department | Experimental Medical Siences
| Sample_contact_institute | Lund University
| Sample_contact_address | Tornavägen 10
| Sample_contact_city | Lund
| Sample_contact_state | Skane
| Sample_contact_zip/postal_code | 22184
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM349nnn/GSM349880/suppl/GSM349880.CEL.gz
| Sample_series_id | GSE13908
| Sample_data_row_count | 45101
| |
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GSM350371 | GPL1261 |
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ileal intestinal epithelial cells - wild type mice
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small intestinal epithelial cell of wild type mice
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strain C57Bl/6, 7-9 weeks old; ileal sample
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Ileum of 4 C57/Bl6 mice were collected. Tissue sectioned and laser capture microscopy was performed using a Zeiss/Palm laser capture system.
|
Sample_geo_accession | GSM350371
| Sample_status | Public on Sep 04 2009
| Sample_submission_date | Dec 11 2008
| Sample_last_update_date | Jan 08 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Appr. 16 000 epithelial cells were collected by laser capture microscopy (Zeiss system).
| Sample_extract_protocol_ch1 | Total RNA was extracted from the catapulted samples using RNA microprep kit (Stratagene). Fourty ng total RNA was expanded by two rounds of in vitro cRNA amplification
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols by core facility
| Sample_hyb_protocol | Standard Affymetrix protocols by core facility
| Sample_scan_protocol | Standard Affymetrix protocols by core facility
| Sample_data_processing | Array data analysis was performed using dCHIP2004 software by user
| Sample_platform_id | GPL1261
| Sample_contact_name | Knut,,Kotarsky
| Sample_contact_email | Knut.Kotarsky@med.lu.se
| Sample_contact_laboratory | Mucosal Immunology
| Sample_contact_department | Experimental Medical Siences
| Sample_contact_institute | Lund University
| Sample_contact_address | Tornavägen 10
| Sample_contact_city | Lund
| Sample_contact_state | Skane
| Sample_contact_zip/postal_code | 22184
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM350nnn/GSM350371/suppl/GSM350371.CEL.gz
| Sample_series_id | GSE13908
| Sample_data_row_count | 45101
| |
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GSM350375 | GPL1261 |
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colonic epithelial cells - germ-free mice
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colonic epithelial cells of germ-free mice
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strain C57/BL6, female, 7-9 weeks old,
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Proximal colon of 4 C57/Bl6 germ-free mice were collected. Tissue sectioned (10 mikrom), stained with hematoxilin and laser capture microscopy was performed using a Zeiss/Palm laser capture system.
|
Sample_geo_accession | GSM350375
| Sample_status | Public on Sep 04 2009
| Sample_submission_date | Dec 11 2008
| Sample_last_update_date | Jan 15 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Appr. 16 000 epithelial cells were collected by laser capture microscopy (Zeiss system).
| Sample_extract_protocol_ch1 | Total RNA was extracted from the catapulted samples using RNA microprep kit (Stratagene). Fourty ng total RNA was expanded by two rounds of in vitro cRNA amplification
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols by core facility
| Sample_hyb_protocol | Standard Affymetrix protocols by core facility
| Sample_scan_protocol | Standard Affymetrix protocols by core facility
| Sample_data_processing | Array data analysis was performed using dCHIP2004 software by user
| Sample_platform_id | GPL1261
| Sample_contact_name | Knut,,Kotarsky
| Sample_contact_email | Knut.Kotarsky@med.lu.se
| Sample_contact_laboratory | Mucosal Immunology
| Sample_contact_department | Experimental Medical Siences
| Sample_contact_institute | Lund University
| Sample_contact_address | Tornavägen 10
| Sample_contact_city | Lund
| Sample_contact_state | Skane
| Sample_contact_zip/postal_code | 22184
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM350nnn/GSM350375/suppl/GSM350375.CEL.gz
| Sample_series_id | GSE13908
| Sample_data_row_count | 45101
| |
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GSM350376 | GPL1261 |
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ileal intestinal epithelial cells - germ-free mice
|
ileal intestinal epithelial cells of germ-free mice
|
strain C57/BL6, female, 7-9 weeks old, ileum, germ-free mice
|
Ileum of 4 C57/Bl6 germ-free mice were collected. Tissue sectioned, stained with hematoxilin and laser capture microscopy was performed using a Zeiss/Palm laser capture system.
|
Sample_geo_accession | GSM350376
| Sample_status | Public on Sep 04 2009
| Sample_submission_date | Dec 11 2008
| Sample_last_update_date | Jan 15 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Appr. 16 000 epithelial cells were collected by laser capture microscopy (Zeiss system).
| Sample_extract_protocol_ch1 | Total RNA was extracted from the catapulted samples using RNA microprep kit (Stratagene). Fourty ng total RNA was expanded by two rounds of in vitro cRNA amplification
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocols by core facility
| Sample_hyb_protocol | Standard Affymetrix protocols by core facility
| Sample_scan_protocol | Standard Affymetrix protocols by core facility
| Sample_data_processing | Array data analysis was performed using dCHIP2004 software by user
| Sample_platform_id | GPL1261
| Sample_contact_name | Knut,,Kotarsky
| Sample_contact_email | Knut.Kotarsky@med.lu.se
| Sample_contact_laboratory | Mucosal Immunology
| Sample_contact_department | Experimental Medical Siences
| Sample_contact_institute | Lund University
| Sample_contact_address | Tornavägen 10
| Sample_contact_city | Lund
| Sample_contact_state | Skane
| Sample_contact_zip/postal_code | 22184
| Sample_contact_country | Sweden
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM350nnn/GSM350376/suppl/GSM350376.CEL.gz
| Sample_series_id | GSE13908
| Sample_data_row_count | 45101
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