Search results for the GEO ID: GSE14062  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM352733 | GPL570 |
|
ALL without MLL - sample 1
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352733
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352733/suppl/GSM352733.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352734 | GPL570 |
|
ALL without MLL - sample 2
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352734
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352734/suppl/GSM352734.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352735 | GPL570 |
|
ALL without MLL - sample 3
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352735
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352735/suppl/GSM352735.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352736 | GPL570 |
|
ALL without MLL - sample 4
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352736
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352736/suppl/GSM352736.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352737 | GPL570 |
|
ALL without MLL - sample 5
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352737
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352737/suppl/GSM352737.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352738 | GPL570 |
|
ALL without MLL - sample 6
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352738
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352738/suppl/GSM352738.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352739 | GPL570 |
|
ALL without MLL - sample 7
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352739
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352739/suppl/GSM352739.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352740 | GPL570 |
|
ALL without MLL - sample 8
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352740
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352740/suppl/GSM352740.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352741 | GPL570 |
|
ALL without MLL - sample 9
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352741
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352741/suppl/GSM352741.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352742 | GPL570 |
|
ALL without MLL - sample 10
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352742
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352742/suppl/GSM352742.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352743 | GPL570 |
|
ALL without MLL - sample 11
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352743
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352743/suppl/GSM352743.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352744 | GPL570 |
|
ALL without MLL - sample 12
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352744
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352744/suppl/GSM352744.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352745 | GPL570 |
|
ALL without MLL - sample 13
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352745
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352745/suppl/GSM352745.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352747 | GPL570 |
|
ALL without MLL - sample 15
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352747
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352747/suppl/GSM352747.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352748 | GPL570 |
|
ALL without MLL - sample 16
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352748
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352748/suppl/GSM352748.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352749 | GPL570 |
|
ALL without MLL - sample 17
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352749
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352749/suppl/GSM352749.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352750 | GPL570 |
|
ALL without MLL - sample 18
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352750
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352750/suppl/GSM352750.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352751 | GPL570 |
|
ALL without MLL - sample 19
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352751
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352751/suppl/GSM352751.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352752 | GPL570 |
|
ALL without MLL - sample 20
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352752
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352752/suppl/GSM352752.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352753 | GPL570 |
|
ALL without MLL - sample 21
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352753
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352753/suppl/GSM352753.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352754 | GPL570 |
|
ALL without MLL - sample 22
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352754
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352754/suppl/GSM352754.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352755 | GPL570 |
|
ALL without MLL - sample 23
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352755
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352755/suppl/GSM352755.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352756 | GPL570 |
|
ALL without MLL - sample 24
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352756
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352756/suppl/GSM352756.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352757 | GPL570 |
|
ALL without MLL - sample 25
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352757
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352757/suppl/GSM352757.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352758 | GPL570 |
|
ALL without MLL - sample 26
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352758
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352758/suppl/GSM352758.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352759 | GPL570 |
|
ALL without MLL - sample 27
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352759
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352759/suppl/GSM352759.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352760 | GPL570 |
|
ALL without MLL - sample 28
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352760
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352760/suppl/GSM352760.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352761 | GPL570 |
|
ALL without MLL - sample 29
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352761
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352761/suppl/GSM352761.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352762 | GPL570 |
|
ALL without MLL - sample 30
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352762
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352762/suppl/GSM352762.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352763 | GPL570 |
|
ALL without MLL - sample 31
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352763
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352763/suppl/GSM352763.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352764 | GPL570 |
|
ALL without MLL - sample 32
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352764
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352764/suppl/GSM352764.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352765 | GPL570 |
|
ALL without MLL - sample 33
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352765
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352765/suppl/GSM352765.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352766 | GPL570 |
|
ALL without MLL - sample 34
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352766
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352766/suppl/GSM352766.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352767 | GPL570 |
|
ALL without MLL - sample 35
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352767
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352767/suppl/GSM352767.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352768 | GPL570 |
|
ALL without MLL - sample 36
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352768
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352768/suppl/GSM352768.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352769 | GPL570 |
|
ALL without MLL - sample 37
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352769
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352769/suppl/GSM352769.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352770 | GPL570 |
|
ALL without MLL - sample 38
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352770
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352770/suppl/GSM352770.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352771 | GPL570 |
|
ALL without MLL - sample 39
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352771
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352771/suppl/GSM352771.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352772 | GPL570 |
|
ALL without MLL - sample 40
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352772
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352772/suppl/GSM352772.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352773 | GPL570 |
|
ALL without MLL - sample 41
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352773
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352773/suppl/GSM352773.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352774 | GPL570 |
|
ALL without MLL - sample 42
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352774
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352774/suppl/GSM352774.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352775 | GPL570 |
|
ALL without MLL - sample 43
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352775
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352775/suppl/GSM352775.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352776 | GPL570 |
|
ALL without MLL - sample 44
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352776
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352776/suppl/GSM352776.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352777 | GPL570 |
|
ALL without MLL - sample 45
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352777
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352777/suppl/GSM352777.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352779 | GPL570 |
|
ALL without MLL - sample 47
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352779
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352779/suppl/GSM352779.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352780 | GPL570 |
|
ALL without MLL - sample 48
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352780
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352780/suppl/GSM352780.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352781 | GPL570 |
|
ALL without MLL - sample 49
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352781
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352781/suppl/GSM352781.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352782 | GPL570 |
|
ALL without MLL - sample 50
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352782
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352782/suppl/GSM352782.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352783 | GPL570 |
|
ALL without MLL - sample 51
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352783
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352783/suppl/GSM352783.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352784 | GPL570 |
|
ALL without MLL - sample 52
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352784
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352784/suppl/GSM352784.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352785 | GPL570 |
|
ALL without MLL - sample 53
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352785
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352785/suppl/GSM352785.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352786 | GPL570 |
|
ALL without MLL - sample 54
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352786
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352786/suppl/GSM352786.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352787 | GPL570 |
|
ALL without MLL - sample 55
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352787
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352787/suppl/GSM352787.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352788 | GPL570 |
|
ALL without MLL - sample 56
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352788
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352788/suppl/GSM352788.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352789 | GPL570 |
|
ALL without MLL - sample 57
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352789
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352789/suppl/GSM352789.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352790 | GPL570 |
|
ALL without MLL - sample 58
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352790
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352790/suppl/GSM352790.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352791 | GPL570 |
|
ALL without MLL - sample 59
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352791
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352791/suppl/GSM352791.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352792 | GPL570 |
|
ALL without MLL - sample 60
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352792
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352792/suppl/GSM352792.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352793 | GPL570 |
|
ALL without MLL - sample 61
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352793
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352793/suppl/GSM352793.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352794 | GPL570 |
|
ALL without MLL - sample 62
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352794
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352794/suppl/GSM352794.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352795 | GPL570 |
|
ALL without MLL - sample 63
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352795
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352795/suppl/GSM352795.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352796 | GPL570 |
|
ALL without MLL - sample 64
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352796
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352796/suppl/GSM352796.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352797 | GPL570 |
|
ALL without MLL - sample 65
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352797
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352797/suppl/GSM352797.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352798 | GPL570 |
|
ALL without MLL - sample 66
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352798
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352798/suppl/GSM352798.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352799 | GPL570 |
|
ALL without MLL - sample 67
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352799
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352799/suppl/GSM352799.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352800 | GPL570 |
|
ALL without MLL - sample 68
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352800
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352800/suppl/GSM352800.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352801 | GPL570 |
|
ALL without MLL - sample 69
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352801
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352801/suppl/GSM352801.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352802 | GPL570 |
|
ALL without MLL - sample 70
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352802
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352802/suppl/GSM352802.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352803 | GPL570 |
|
ALL without MLL - sample 71
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352803
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352803/suppl/GSM352803.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352804 | GPL570 |
|
ALL without MLL - sample 72
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352804
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352804/suppl/GSM352804.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352805 | GPL570 |
|
ALL without MLL - sample 73
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352805
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352805/suppl/GSM352805.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352806 | GPL570 |
|
ALL without MLL - sample 74
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352806
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352806/suppl/GSM352806.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352807 | GPL570 |
|
ALL without MLL - sample 75
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352807
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352807/suppl/GSM352807.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352808 | GPL570 |
|
ALL without MLL - sample 76
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352808
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352808/suppl/GSM352808.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352809 | GPL570 |
|
ALL without MLL - sample 77
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352809
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352809/suppl/GSM352809.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352810 | GPL570 |
|
ALL without MLL - sample 78
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352810
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352810/suppl/GSM352810.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352812 | GPL570 |
|
ALL without MLL - sample 80
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352812
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352812/suppl/GSM352812.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352813 | GPL570 |
|
ALL without MLL - sample 81
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352813
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352813/suppl/GSM352813.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352814 | GPL570 |
|
ALL without MLL - sample 82
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352814
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352814/suppl/GSM352814.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352815 | GPL570 |
|
ALL without MLL - sample 83
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352815
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352815/suppl/GSM352815.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352816 | GPL570 |
|
ALL without MLL - sample 84
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352816
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352816/suppl/GSM352816.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352817 | GPL570 |
|
ALL without MLL - sample 85
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352817
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352817/suppl/GSM352817.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352818 | GPL570 |
|
ALL without MLL - sample 86
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352818
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352818/suppl/GSM352818.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352819 | GPL570 |
|
ALL without MLL - sample 87
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352819
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352819/suppl/GSM352819.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352820 | GPL570 |
|
ALL without MLL - sample 88
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352820
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352820/suppl/GSM352820.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352821 | GPL570 |
|
ALL without MLL - sample 89
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352821
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352821/suppl/GSM352821.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352822 | GPL570 |
|
ALL without MLL - sample 90
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352822
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352822/suppl/GSM352822.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352823 | GPL570 |
|
AML without MLL - sample 91
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352823
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352823/suppl/GSM352823.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352824 | GPL570 |
|
AML without MLL - sample 92
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352824
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352824/suppl/GSM352824.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352825 | GPL570 |
|
AML without MLL - sample 93
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352825
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352825/suppl/GSM352825.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352826 | GPL570 |
|
AML without MLL - sample 94
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352826
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352826/suppl/GSM352826.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352827 | GPL570 |
|
AML without MLL - sample 95
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352827
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352827/suppl/GSM352827.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352828 | GPL570 |
|
AML without MLL - sample 96
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352828
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352828/suppl/GSM352828.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352829 | GPL570 |
|
AML without MLL - sample 97
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352829
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352829/suppl/GSM352829.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352830 | GPL570 |
|
AML without MLL - sample 98
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352830
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352830/suppl/GSM352830.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352831 | GPL570 |
|
AML without MLL - sample 99
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352831
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352831/suppl/GSM352831.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352832 | GPL570 |
|
AML without MLL - sample 100
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352832
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352832/suppl/GSM352832.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352833 | GPL570 |
|
AML without MLL - sample 101
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352833
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352833/suppl/GSM352833.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352834 | GPL570 |
|
AML without MLL - sample 102
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352834
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352834/suppl/GSM352834.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352835 | GPL570 |
|
AML without MLL - sample 103
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352835
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352835/suppl/GSM352835.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352836 | GPL570 |
|
AML without MLL - sample 104
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352836
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352836/suppl/GSM352836.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352837 | GPL570 |
|
AML without MLL - sample 105
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352837
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352837/suppl/GSM352837.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352838 | GPL570 |
|
AML without MLL - sample 106
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352838
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352838/suppl/GSM352838.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352839 | GPL570 |
|
AML without MLL - sample 107
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352839
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352839/suppl/GSM352839.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352840 | GPL570 |
|
AML without MLL - sample 108
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352840
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352840/suppl/GSM352840.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352841 | GPL570 |
|
AML without MLL - sample 109
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352841
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352841/suppl/GSM352841.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352842 | GPL570 |
|
AML without MLL - sample 110
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352842
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352842/suppl/GSM352842.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352843 | GPL570 |
|
AML without MLL - sample 111
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352843
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352843/suppl/GSM352843.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352844 | GPL570 |
|
AML without MLL - sample 112
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352844
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352844/suppl/GSM352844.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352845 | GPL570 |
|
AML without MLL - sample 113
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352845
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352845/suppl/GSM352845.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352846 | GPL570 |
|
AML without MLL - sample 114
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352846
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352846/suppl/GSM352846.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352847 | GPL570 |
|
AML without MLL - sample 115
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352847
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352847/suppl/GSM352847.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352848 | GPL570 |
|
AML without MLL - sample 116
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352848
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352848/suppl/GSM352848.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352849 | GPL570 |
|
ALL with MLL - sample 117
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352849
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352849/suppl/GSM352849.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352850 | GPL570 |
|
ALL with MLL - sample 118
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352850
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352850/suppl/GSM352850.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352851 | GPL570 |
|
ALL with MLL - sample 119
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352851
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352851/suppl/GSM352851.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352852 | GPL570 |
|
ALL with MLL - sample 120
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352852
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352852/suppl/GSM352852.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352853 | GPL570 |
|
ALL with MLL - sample 121
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352853
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352853/suppl/GSM352853.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352854 | GPL570 |
|
ALL with MLL - sample 122
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352854
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352854/suppl/GSM352854.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352855 | GPL570 |
|
ALL with MLL - sample 123
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352855
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352855/suppl/GSM352855.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352856 | GPL570 |
|
ALL with MLL - sample 124
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352856
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352856/suppl/GSM352856.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352857 | GPL570 |
|
ALL with MLL - sample 125
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352857
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352857/suppl/GSM352857.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352858 | GPL570 |
|
ALL with MLL - sample 126
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352858
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352858/suppl/GSM352858.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352859 | GPL570 |
|
ALL with MLL - sample 127
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352859
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352859/suppl/GSM352859.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352860 | GPL570 |
|
ALL with MLL - sample 128
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352860
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352860/suppl/GSM352860.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352861 | GPL570 |
|
ALL with MLL - sample 129
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352861
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352861/suppl/GSM352861.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352862 | GPL570 |
|
ALL with MLL - sample 130
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352862
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352862/suppl/GSM352862.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352863 | GPL570 |
|
ALL with MLL - sample 131
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352863
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352863/suppl/GSM352863.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352864 | GPL570 |
|
ALL with MLL - sample 132
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352864
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352864/suppl/GSM352864.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352865 | GPL570 |
|
AML with MLL - sample 133
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352865
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352865/suppl/GSM352865.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352866 | GPL570 |
|
AML with MLL - sample 134
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352866
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352866/suppl/GSM352866.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352867 | GPL570 |
|
AML with MLL - sample 135
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352867
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352867/suppl/GSM352867.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352868 | GPL570 |
|
AML with MLL - sample 136
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352868
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352868/suppl/GSM352868.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352869 | GPL570 |
|
AML with MLL - sample 137
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352869
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352869/suppl/GSM352869.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352870 | GPL570 |
|
AML with MLL - sample 138
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352870
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352870/suppl/GSM352870.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352871 | GPL570 |
|
AML with MLL - sample 139
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352871
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352871/suppl/GSM352871.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
| | |
|
GSM352872 | GPL570 |
|
AML with MLL - sample 140
|
Human white blood cells
|
Leukemia samples
Bone Marrow
|
Gene expression data from pediatric acute leukemia samples at diagnosis
|
| Sample_geo_accession | GSM352872
| | Sample_status | Public on Jul 22 2009
| | Sample_submission_date | Dec 19 2008
| | Sample_last_update_date | Jul 22 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | White blood cells were isolated through Ficoll-Hypaque density gradient centrifugation
| | Sample_growth_protocol_ch1 | No growth procolos were used
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Lysis of the mononuclear cells followed by lysate homonogenization using a biopolymer shredding system in a microcentrifuge spin-column format followed by total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM352nnn/GSM352872/suppl/GSM352872.CEL.gz
| | Sample_series_id | GSE14062
| | Sample_data_row_count | 54675
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