Search results for the GEO ID: GSE14236  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM356653 | GPL1261 |
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32DC
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32DC
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cell line
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32DC
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| Sample_geo_accession | GSM356653
| | Sample_status | Public on Mar 31 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | Jan 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol Reagent (invitrogen) according to manufacturer's instructions and purified on RNeasy MinElute Spin Columns (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA were synthesized by GeneChip T7-Oligo(dT) Promoter Primer Kit（Affymetrix) and TaKaRa cDNA Synthesis Kit （TaKaRa Bio） from 3ug total RNA. Biotinylated cRNA were synthesized by IVT Labeling Kit(Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Single Array Analysis were calculated by Microarray Suite version 5.0 (MAS5.0) with Affymetrix default setting and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroki,,Yamaguchi
| | Sample_contact_email | y-hiroki@fd6.so-net.ne.jp
| | Sample_contact_department | Division of Hematology, Department of Internal Medicine
| | Sample_contact_institute | Nippon Medical School
| | Sample_contact_address | 1-1-5 Sendagi, Bunkyo-Ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8603
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356653/suppl/GSM356653.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356653/suppl/GSM356653.CHP.gz
| | Sample_series_id | GSE14236
| | Sample_data_row_count | 45101
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GSM356654 | GPL1261 |
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MLL-AF4 expressing 32Dc
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MLL-AF4 expressing 32Dc
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cell line
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32DC+MLL-AF4
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| Sample_geo_accession | GSM356654
| | Sample_status | Public on Mar 31 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | Jan 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol Reagent (invitrogen) according to manufacturer's instructions and purified on RNeasy MinElute Spin Columns (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA were synthesized by GeneChip T7-Oligo(dT) Promoter Primer Kit（Affymetrix) and TaKaRa cDNA Synthesis Kit （TaKaRa Bio） from 3ug total RNA. Biotinylated cRNA were synthesized by IVT Labeling Kit(Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Single Array Analysis were calculated by Microarray Suite version 5.0 (MAS5.0) with Affymetrix default setting and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroki,,Yamaguchi
| | Sample_contact_email | y-hiroki@fd6.so-net.ne.jp
| | Sample_contact_department | Division of Hematology, Department of Internal Medicine
| | Sample_contact_institute | Nippon Medical School
| | Sample_contact_address | 1-1-5 Sendagi, Bunkyo-Ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8603
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356654/suppl/GSM356654.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356654/suppl/GSM356654.CHP.gz
| | Sample_series_id | GSE14236
| | Sample_data_row_count | 45101
| | |
|
GSM356655 | GPL1261 |
|
Flt3 TKD+MLL-AF4 expressing 32Dc
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Flt3 TKD+MLL-AF4 expressing 32Dc
|
cell line
|
32DC+MLL-AF4+Flt3sub
|
| Sample_geo_accession | GSM356655
| | Sample_status | Public on Mar 31 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | Jan 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol Reagent (invitrogen) according to manufacturer's instructions and purified on RNeasy MinElute Spin Columns (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNA were synthesized by GeneChip T7-Oligo(dT) Promoter Primer Kit（Affymetrix) and TaKaRa cDNA Synthesis Kit （TaKaRa Bio） from 3ug total RNA. Biotinylated cRNA were synthesized by IVT Labeling Kit(Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000 7G.
| | Sample_data_processing | Single Array Analysis were calculated by Microarray Suite version 5.0 (MAS5.0) with Affymetrix default setting and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Hiroki,,Yamaguchi
| | Sample_contact_email | y-hiroki@fd6.so-net.ne.jp
| | Sample_contact_department | Division of Hematology, Department of Internal Medicine
| | Sample_contact_institute | Nippon Medical School
| | Sample_contact_address | 1-1-5 Sendagi, Bunkyo-Ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8603
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356655/suppl/GSM356655.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356655/suppl/GSM356655.CHP.gz
| | Sample_series_id | GSE14236
| | Sample_data_row_count | 45101
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