Search results for the GEO ID: GSE14244  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM356768 | GPL96 |
|
MDA-MB-231
|
MDA-MB-231
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356768
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356768/suppl/GSM356768.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356768/suppl/GSM356768.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356769 | GPL96 |
|
Cell fusion partner line Bm
|
Cell fusion partner line Bm
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356769
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356769/suppl/GSM356769.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356769/suppl/GSM356769.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356770 | GPL96 |
|
Cell fusion partner line Lm
|
Cell fusion partner line Lm
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356770
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356770/suppl/GSM356770.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356770/suppl/GSM356770.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356771 | GPL96 |
|
Self-fused line BBm
|
Self-fused line BBm
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356771
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356771/suppl/GSM356771.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356771/suppl/GSM356771.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356772 | GPL96 |
|
Self-fused line LLm
|
Self-fused line LLm
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356772
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356772/suppl/GSM356772.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356772/suppl/GSM356772.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356773 | GPL96 |
|
Hetero-fused line BLm-FACS
|
Hetero-fused line BLm-FACS
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356773
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356773/suppl/GSM356773.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356773/suppl/GSM356773.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356774 | GPL96 |
|
Hetero-fused line BLm-DRUG
|
Hetero-fused line BLm-DRUG
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356774
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356774/suppl/GSM356774.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356774/suppl/GSM356774.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356775 | GPL96 |
|
Hetero-fused line BLm-DRUG, clone 8
|
Hetero-fused line BLm-DRUG, clone 8
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356775
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356775/suppl/GSM356775.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356775/suppl/GSM356775.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356776 | GPL96 |
|
Hetero-fused line BLm-DRUG, clone 12
|
Hetero-fused line BLm-DRUG, clone 12
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356776
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356776/suppl/GSM356776.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356776/suppl/GSM356776.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356777 | GPL96 |
|
Hetero-fused line BLm-DRUG, clone 18
|
Hetero-fused line BLm-DRUG, clone 18
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356777
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356777/suppl/GSM356777.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356777/suppl/GSM356777.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356778 | GPL96 |
|
Bone metastatic line 1833
|
Bone metastatic line 1833
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356778
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356778/suppl/GSM356778.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356778/suppl/GSM356778.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356779 | GPL96 |
|
Bone metastatic line SCP14
|
Bone metastatic line SCP14
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356779
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356779/suppl/GSM356779.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356779/suppl/GSM356779.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356780 | GPL96 |
|
Bone metastatic line SCP20
|
Bone metastatic line SCP20
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356780
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356780/suppl/GSM356780.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356780/suppl/GSM356780.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356781 | GPL96 |
|
Bone metastatic line SCP25
|
Bone metastatic line SCP25
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356781
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356781/suppl/GSM356781.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356781/suppl/GSM356781.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356782 | GPL96 |
|
Bone metastatic line SCP46
|
Bone metastatic line SCP46
|
Tissue: breast cancer
|
Bone metastatic signature: positive
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356782
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356782/suppl/GSM356782.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356782/suppl/GSM356782.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356783 | GPL96 |
|
Lung metastatic line 3481
|
Lung metastatic line 3481
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356783
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356783/suppl/GSM356783.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356783/suppl/GSM356783.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356784 | GPL96 |
|
Lung metastatic line 4142
|
Lung metastatic line 4142
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356784
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356784/suppl/GSM356784.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356784/suppl/GSM356784.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356785 | GPL96 |
|
Lung metastatic line 4173
|
Lung metastatic line 4173
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356785
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356785/suppl/GSM356785.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356785/suppl/GSM356785.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356786 | GPL96 |
|
Lung metastatic line 4175
|
Lung metastatic line 4175
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356786
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356786/suppl/GSM356786.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356786/suppl/GSM356786.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356787 | GPL96 |
|
Lung metastatic line 4180
|
Lung metastatic line 4180
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: positive
|
| Sample_geo_accession | GSM356787
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356787/suppl/GSM356787.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356787/suppl/GSM356787.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356788 | GPL96 |
|
Weakly metastatic line SCP3
|
Weakly metastatic line SCP3
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356788
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356788/suppl/GSM356788.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356788/suppl/GSM356788.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356789 | GPL96 |
|
Weakly metastatic line SCP4
|
Weakly metastatic line SCP4
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356789
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356789/suppl/GSM356789.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356789/suppl/GSM356789.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356790 | GPL96 |
|
Weakly metastatic line SCP6
|
Weakly metastatic line SCP6
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356790
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356790/suppl/GSM356790.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356790/suppl/GSM356790.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356791 | GPL96 |
|
Weakly metastatic line SCP28
|
Weakly metastatic line SCP28
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356791
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356791/suppl/GSM356791.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356791/suppl/GSM356791.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356792 | GPL96 |
|
Weakly metastatic line SCP32
|
Weakly metastatic line SCP32
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356792
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356792/suppl/GSM356792.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356792/suppl/GSM356792.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
GSM356793 | GPL96 |
|
Weakly metastatic line SCP43
|
Weakly metastatic line SCP43
|
Tissue: breast cancer
|
Bone metastatic signature: negative
Lung metastatic signature: negative
|
| Sample_geo_accession | GSM356793
| | Sample_status | Public on May 06 2009
| | Sample_submission_date | Dec 30 2008
| | Sample_last_update_date | May 06 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were grown to sub-confluency before harvesting RNA.
| | Sample_growth_protocol_ch1 | The sublines and their fusion variants were maintained in DMEM with 10% FBS and antibiotics supplemented with appropriate selective drugs.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using Qiagen RNAeasy mini kit following manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Genespring GX 7.3 Expression Analysis using Per Chip (normalize to 50th percentile) and Per Gene (normalize to median) normalization methods.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yibin,,Kang
| | Sample_contact_email | ykang@princeton.edu
| | Sample_contact_phone | 609-258-9120
| | Sample_contact_department | Molecular Biology
| | Sample_contact_institute | Princeton University
| | Sample_contact_address | LTL 254, Washington Road
| | Sample_contact_city | Princeton
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 08544
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356793/suppl/GSM356793.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM356nnn/GSM356793/suppl/GSM356793.CHP.gz
| | Sample_series_id | GSE14244
| | Sample_data_row_count | 22283
| | |
|
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| |
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