Search results for the GEO ID: GSE14269  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM357074 | GPL1355 |
|
F3-control adult male rat whole brain, replica 1
|
adult male rat whole brain, control
|
Whole brain was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male whole brain from F3 control generation.
|
| Sample_geo_accession | GSM357074
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and whole brains were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357074/suppl/GSM357074.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357075 | GPL1355 |
|
F3-control adult male rat whole brain, replica 2
|
adult male rat whole brain, control
|
Whole brain was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male whole brain from F3 control generation.
|
| Sample_geo_accession | GSM357075
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and whole brains were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357075/suppl/GSM357075.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357076 | GPL1355 |
|
F3-vinclozolin treated adult male rat whole brain, replica 1
|
adult male rat whole brain, vinclozolin-treated
|
Whole brain was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male whole brain from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357076
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and whole brains were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357076/suppl/GSM357076.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357077 | GPL1355 |
|
F3-vinclozolin treated adult male rat whole brain, replica 2
|
adult male rat whole brain, vinclozolin-treated
|
Whole brain was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male whole brain from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357077
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and whole brains were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357077/suppl/GSM357077.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357078 | GPL1355 |
|
F3-control adult male rat amygdala, replica 1
|
adult male rat amygdala, control
|
Amygdala was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male amygdala from F3 control generation.
|
| Sample_geo_accession | GSM357078
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357078/suppl/GSM357078.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357079 | GPL1355 |
|
F3-control adult male rat amygdala, replica 2
|
adult male rat amygdala, control
|
Amygdala was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male amygdala from F3 control generation.
|
| Sample_geo_accession | GSM357079
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357079/suppl/GSM357079.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357080 | GPL1355 |
|
F3-vinclozolin treated adult male rat amygdala, replica 1
|
adult male rat amygdala, vinclozolin-treated
|
Amygdala was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male amygdala from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357080
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357080/suppl/GSM357080.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357081 | GPL1355 |
|
F3-vinclozolin treated adult male rat amygdala, replica 2
|
adult male rat amygdala, vinclozolin-treated
|
Amygdala was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male amygdala from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357081
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357081/suppl/GSM357081.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357082 | GPL1355 |
|
F3-control adult male rat hippocampus, replica 1
|
adult male rat hippocampus, control
|
Hippocampus was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male hippocampus from F3 control generation.
|
| Sample_geo_accession | GSM357082
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357082/suppl/GSM357082.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357083 | GPL1355 |
|
F3-control adult male rat hippocampus, replica 2
|
adult male rat hippocampus, control
|
Hippocampus was dissected from adult male of F3-control Sprague-Dawley rat.
|
Gene expression data for adult male hippocampus from F3 control generation.
|
| Sample_geo_accession | GSM357083
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357083/suppl/GSM357083.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357084 | GPL1355 |
|
F3-vinclozolin treated adult male rat hippocampus, replica 1
|
adult male rat hippocampus, vinclozolin-treated
|
Hippocampus was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male hippocampus from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357084
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357084/suppl/GSM357084.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357085 | GPL1355 |
|
F3-vinclozolin treated adult male rat hippocampus, replica 2
|
adult male rat hippocampus, vinclozolin-treated
|
Hippocampus was dissected from adult male of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult male hippocampus from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357085
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult male rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357085/suppl/GSM357085.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357086 | GPL1355 |
|
F3-control adult female rat amygdala, replica 1
|
adult female rat amygdala, control
|
Amygdala was dissected from adult female of F3-control Sprague-Dawley rat.
|
Gene expression data for adult female amygdala from F3 control generation.
|
| Sample_geo_accession | GSM357086
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357086/suppl/GSM357086.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357087 | GPL1355 |
|
F3-control adult female rat amygdala, replica 2
|
adult female rat amygdala, control
|
Amygdala was dissected from adult female of F3-control Sprague-Dawley rat.
|
Gene expression data for adult female amygdala from F3 control generation.
|
| Sample_geo_accession | GSM357087
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and amygdalas were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357087/suppl/GSM357087.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357088 | GPL1355 |
|
F3-vinclozolin treated adult female rat amygdala, replica 1
|
adult female rat amygdala, vinclozolin-treated
|
Amygdala was dissected from adult female of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult female amygdala from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357088
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357088/suppl/GSM357088.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357089 | GPL1355 |
|
F3-vinclozolin treated adult female rat amygdala, replica 2
|
adult female rat amygdala, vinclozolin-treated
|
Amygdala was dissected from adult female of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult female amygdala from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357089
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357089/suppl/GSM357089.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357090 | GPL1355 |
|
F3-control adult female rat hippocampus, replica 1
|
adult female rat hippocampus, control
|
Hippocampus was dissected from adult female of F3-control Sprague-Dawley rat.
|
Gene expression data for adult female hippocampus from F3 control generation.
|
| Sample_geo_accession | GSM357090
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357090/suppl/GSM357090.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357091 | GPL1355 |
|
F3-control adult female rat hippocampus, replica 2
|
adult female rat hippocampus, control
|
Hippocampus was dissected from adult female of F3-control Sprague-Dawley rat.
|
Gene expression data for adult female hippocampus from F3 control generation.
|
| Sample_geo_accession | GSM357091
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357091/suppl/GSM357091.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357092 | GPL1355 |
|
F3-vinclozolin treated adult female rat hippocampus, replica 1
|
adult female rat hippocampus, vinclozolin-treated
|
Hippocampus was dissected from adult female of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult female hippocampus from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357092
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357092/suppl/GSM357092.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
GSM357093 | GPL1355 |
|
F3-vinclozolin treated adult female rat hippocampus, replica 2
|
adult female rat hippocampus, vinclozolin-treated
|
Hippocampus was dissected from adult female of F3-vinclozolin-treated Sprague-Dawley rat.
|
Gene expression data for adult female hippocampus from F3 vinclozolin-treated generation.
|
| Sample_geo_accession | GSM357093
| | Sample_status | Public on Jan 03 2009
| | Sample_submission_date | Jan 02 2009
| | Sample_last_update_date | Jan 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Pregnant rats were given intraperitoneal injections of vinclozolin (100 mg/kg/day) in vehicle suspense (sesame oil and DMSO) from pregnancy day 8 to 14. F1-generation male and female from different control lines were mated to produce F2 generation animals which were mated again to produce F3-generation. F3-generation adult female rats were euthanized and hippocampi were removed according to IACUC-approved animal use protocols.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue from one animal was used to make each RNA sample. RNA was extracted using the Trizol reagent according to manufacturer's instructions (Sigma, St. Louis, MO).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures.
| | Sample_hyb_protocol | Standard Affymetrix procedures.
| | Sample_scan_protocol | Chips were scanned using Affymetrix Gene Chip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Affymetrix GeneChip Operating Software using default normalization method. Target signal was set to 125. MAS-5 preprocessing was used.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Michael,K,Skinner
| | Sample_contact_email | skinner@mail.wsu.edu
| | Sample_contact_department | SBS
| | Sample_contact_institute | WSU
| | Sample_contact_address | Abelson 507
| | Sample_contact_city | Pullman
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 99163
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357093/suppl/GSM357093.CEL.gz
| | Sample_series_id | GSE14269
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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