Search results for the GEO ID: GSE14278  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM357147 | GPL570 |
|
HIV-R sample 1
|
ML767
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357147
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357147/suppl/GSM357147.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357148 | GPL570 |
|
HIV-R sample 2
|
ML466
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357148
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357148/suppl/GSM357148.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357149 | GPL570 |
|
HIV-R sample 3
|
ML1643
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357149
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357149/suppl/GSM357149.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357150 | GPL570 |
|
HIV-R sample 4
|
ML1938
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357150
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357150/suppl/GSM357150.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357151 | GPL570 |
|
HIV-R sample 5
|
ML1928
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357151
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357151/suppl/GSM357151.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357152 | GPL570 |
|
HIV-R sample 6
|
ML1747
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357152
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357152/suppl/GSM357152.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357153 | GPL570 |
|
HIV-R sample 7
|
ML1260
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357153
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357153/suppl/GSM357153.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357154 | GPL570 |
|
HIV-R sample 8
|
ML1969
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357154
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357154/suppl/GSM357154.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357155 | GPL570 |
|
HIV-R sample 9
|
ML1700
|
HIV resistant
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357155
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357155/suppl/GSM357155.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357156 | GPL570 |
|
HIV-HRN sample 1
|
ML2040
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357156
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357156/suppl/GSM357156.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357157 | GPL570 |
|
HIV-HRN sample 2
|
ML2231
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357157
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357157/suppl/GSM357157.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357158 | GPL570 |
|
HIV-HRN sample 3
|
ML2140
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357158
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357158/suppl/GSM357158.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357159 | GPL570 |
|
HIV-HRN sample 4
|
ML2034
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357159
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357159/suppl/GSM357159.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357160 | GPL570 |
|
HIV-HRN sample 5
|
ML2200
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357160
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357160/suppl/GSM357160.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357161 | GPL570 |
|
HIV-HRN sample 6
|
ML2282
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357161
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357161/suppl/GSM357161.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357162 | GPL570 |
|
HIV-HRN sample 7
|
ML2236
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357162
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357162/suppl/GSM357162.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357163 | GPL570 |
|
HIV-HRN sample 8
|
ML2243
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357163
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357163/suppl/GSM357163.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
GSM357164 | GPL570 |
|
HIV-HRN sample 9
|
ML2043
|
HIV high-risk negative
|
Gene expression data from unstimulated CD4+ T cells of an HIV resistant commercial sex-worker from Nairobi, Kenya
|
| Sample_geo_accession | GSM357164
| | Sample_status | Public on Mar 02 2010
| | Sample_submission_date | Jan 05 2009
| | Sample_last_update_date | Mar 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PBMC were unstimulated and negatively selected for being CD4+ by magentic bead purification
| | Sample_growth_protocol_ch1 | PBMC isolated from whole blood were cultured for 24 hours in RPMI+10%FCS, 2% pen/strep at 37C and 5% CO2
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini kit plus kits following manufacturers instructions
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 50ng of total RNA was amplified and labeled using GeneChip Two-Cycle Target Labeling Kits (Affymetrix) and MEGA script T7 kits (Ambion) following manufacturers instructions.
| | Sample_hyb_protocol | Hybridization was carried out following the manufacturers instructions for the Affymetrix U133 Plus 2.0 GeneChips
| | Sample_scan_protocol | Scannig was performed on an Affymetrix GeneChip Scanner 3000
| | Sample_data_processing | Data were analysed using ArrayAssist software (Stratagene). Data were normalized unsing the PLIER algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Paul,,McLaren
| | Sample_contact_email | pmclaren@rics.bwh.harvard.edu
| | Sample_contact_phone | 617 525-4631
| | Sample_contact_department | Medicine
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 77 Avenue Louis Pasteur, NRB150
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357164/suppl/GSM357164.CEL.gz
| | Sample_series_id | GSE14278
| | Sample_series_id | GSE14280
| | Sample_data_row_count | 54675
| | |
|
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| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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