Search results for the GEO ID: GSE14286 ![](/q11.jpeg) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM357392 | GPL96 |
|
Biophenotypic leukemia patient #28
|
diagnostic BM aspirates or peripheral blood, patient #28
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357392
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357392/suppl/GSM357392.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357393 | GPL96 |
|
Biophenotypic leukemia patient #11
|
diagnostic BM aspirates or peripheral blood, patient #11
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357393
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357393/suppl/GSM357393.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357394 | GPL96 |
|
Biophenotypic leukemia patient #4
|
diagnostic BM aspirates or peripheral blood, patient #4
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357394
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357394/suppl/GSM357394.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357395 | GPL96 |
|
Biophenotypic leukemia patient #20
|
diagnostic BM aspirates or peripheral blood, patient #20
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357395
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357395/suppl/GSM357395.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357396 | GPL96 |
|
Biophenotypic leukemia patient #15
|
diagnostic BM aspirates or peripheral blood, patient #15
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357396
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357396/suppl/GSM357396.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357397 | GPL96 |
|
Biophenotypic leukemia patient #16
|
diagnostic BM aspirates or peripheral blood, patient #16
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357397
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357397/suppl/GSM357397.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357398 | GPL96 |
|
Biophenotypic leukemia patient #6
|
diagnostic BM aspirates or peripheral blood, patient #6
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357398
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357398/suppl/GSM357398.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357399 | GPL96 |
|
Biophenotypic leukemia patient #25
|
diagnostic BM aspirates or peripheral blood, patient #25
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357399
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357399/suppl/GSM357399.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357400 | GPL96 |
|
Biophenotypic leukemia patient #33
|
diagnostic BM aspirates or peripheral blood, patient #33
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357400
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357400/suppl/GSM357400.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357401 | GPL96 |
|
Biophenotypic leukemia patient #18
|
diagnostic BM aspirates or peripheral blood, patient #18
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357401
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357401/suppl/GSM357401.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357402 | GPL96 |
|
Biophenotypic leukemia patient #26
|
diagnostic BM aspirates or peripheral blood, patient #26
|
Pediatric patient sample
|
Gene expression data for pediatric patient diagnostic sample.
|
Sample_geo_accession | GSM357402
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357402/suppl/GSM357402.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
| |
|
GSM357403 | GPL96 |
|
Biophenotypic leukemia patient #31
|
diagnostic BM aspirates or peripheral blood, patient #31
|
Pediatric patient sample
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Gene expression data for pediatric patient diagnostic sample.
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Sample_geo_accession | GSM357403
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357403/suppl/GSM357403.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
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GSM357404 | GPL96 |
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Biophenotypic leukemia patient #21
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diagnostic BM aspirates or peripheral blood, patient #21
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Pediatric patient sample
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Gene expression data for pediatric patient diagnostic sample.
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Sample_geo_accession | GSM357404
| Sample_status | Public on Jan 06 2009
| Sample_submission_date | Jan 05 2009
| Sample_last_update_date | Jan 05 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA was synthesized and labeled with biotinylated UTP and CTP by in vitro transcription using the T7 promoter coupled double stranded cDNA as template and the T7 RNA Transcript Labeling Kit (ENZO Diagnostics Inc., Farmingdale NY).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Array Set HG-U133A. GeneChips were washed at 25°C with 6 X SSPE (0.9M NaCl, 60 mM NaH2PO4, 6 mM EDTA + 0.01% Tween 20) followed by a stringent wash at 50°C with 100 mM MES, 0.1M NaCl2, 0.01% Tween 20.
| Sample_scan_protocol | Arrays were scanned using a laser confocal scanner (Agilent, Palo Alto, CA).
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL96
| Sample_contact_name | Xueyuan,,Cao
| Sample_contact_email | xueyuan.cao@stjude.org
| Sample_contact_phone | 901-595-5255
| Sample_contact_fax | 901-595-4585
| Sample_contact_department | Biostatistics
| Sample_contact_institute | St Jude Children's Research Hospital
| Sample_contact_address | 262 Danny Thomas Place
| Sample_contact_city | Memphis
| Sample_contact_state | TN
| Sample_contact_zip/postal_code | 38105
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM357nnn/GSM357404/suppl/GSM357404.CEL.gz
| Sample_series_id | GSE14286
| Sample_data_row_count | 16383
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