Search results for the GEO ID: GSE14378  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM359477 | GPL570 |
|
Met 1
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 1
no. of metastases: 44
|
none
|
| Sample_geo_accession | GSM359477
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359477/suppl/GSM359477.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559705
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359478 | GPL570 |
|
Met 2
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 15
no. of metastases: 10
|
none
|
| Sample_geo_accession | GSM359478
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359478/suppl/GSM359478.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559706
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359479 | GPL570 |
|
Met 3
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 95
no. of metastases: 18
|
none
|
| Sample_geo_accession | GSM359479
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359479/suppl/GSM359479.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559707
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359480 | GPL570 |
|
Met 4
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: f
Disease free interval (DFI) in months: 12
no. of metastases: 4
|
none
|
| Sample_geo_accession | GSM359480
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359480/suppl/GSM359480.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559708
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359481 | GPL570 |
|
Met 5
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 38
no. of metastases: 3
|
none
|
| Sample_geo_accession | GSM359481
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359481/suppl/GSM359481.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559709
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359482 | GPL570 |
|
Met 6
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 38
no. of metastases: 3
|
none
|
| Sample_geo_accession | GSM359482
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359482/suppl/GSM359482.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559710
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359483 | GPL570 |
|
Met 7
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 10
no. of metastases: 16
|
none
|
| Sample_geo_accession | GSM359483
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359483/suppl/GSM359483.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559711
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359484 | GPL570 |
|
Met 8
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 2
no. of metastases: 24
|
none
|
| Sample_geo_accession | GSM359484
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359484/suppl/GSM359484.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559712
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359485 | GPL570 |
|
Met 9
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 9
no. of metastases: 1
|
none
|
| Sample_geo_accession | GSM359485
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359485/suppl/GSM359485.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559713
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359486 | GPL570 |
|
Met 11
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 31
no. of metastases: 3
|
none
|
| Sample_geo_accession | GSM359486
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359486/suppl/GSM359486.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559714
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359487 | GPL570 |
|
Met 12
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 1
no. of metastases: 24
|
none
|
| Sample_geo_accession | GSM359487
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359487/suppl/GSM359487.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559715
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359488 | GPL570 |
|
Met 13
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 1
no. of metastases: 37
|
none
|
| Sample_geo_accession | GSM359488
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359488/suppl/GSM359488.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559716
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359489 | GPL570 |
|
Met 14
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 60
no. of metastases: 1
|
none
|
| Sample_geo_accession | GSM359489
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359489/suppl/GSM359489.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559717
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359490 | GPL570 |
|
Met 15
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: f
Disease free interval (DFI) in months: 156
no. of metastases: 6
|
none
|
| Sample_geo_accession | GSM359490
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359490/suppl/GSM359490.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559718
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359491 | GPL570 |
|
Met 16
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: f
Disease free interval (DFI) in months: 90
no. of metastases: 8
|
none
|
| Sample_geo_accession | GSM359491
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359491/suppl/GSM359491.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559719
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359492 | GPL570 |
|
Met 17
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: f
Disease free interval (DFI) in months: 90
no. of metastases: 8
|
none
|
| Sample_geo_accession | GSM359492
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359492/suppl/GSM359492.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559720
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359493 | GPL570 |
|
Met 18
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 8
no. of metastases: >80
|
none
|
| Sample_geo_accession | GSM359493
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359493/suppl/GSM359493.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559721
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359494 | GPL570 |
|
Met 20
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 114
no. of metastases: 2
|
none
|
| Sample_geo_accession | GSM359494
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359494/suppl/GSM359494.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559722
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359495 | GPL570 |
|
Met 23
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: f
Disease free interval (DFI) in months: 11
no. of metastases: 2
|
none
|
| Sample_geo_accession | GSM359495
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359495/suppl/GSM359495.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559723
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
GSM359496 | GPL570 |
|
Met 25
|
pulmonary metastasis of clear-cell renal cell carcinoma (laser resection)
|
gender: m
Disease free interval (DFI) in months: 127
no. of metastases: 5
|
none
|
| Sample_geo_accession | GSM359496
| | Sample_status | Public on Jan 13 2009
| | Sample_submission_date | Jan 12 2009
| | Sample_last_update_date | Jun 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Metastases were obtained during precise laser-based resection (1318 nm neodynium-YAG, Coswig Specialized Hospital).
| | Sample_extract_protocol_ch1 | Cryo-sections (4 um) of snap-frozen metastases were made and homogenized using QiaShredder (Qiagen, Hilden, Germany)
| | Sample_extract_protocol_ch1 | RNA was isolated with the RNeasy Mini Kit (Qiagen) with additional DNA digestion (RNase-Free DNase Set, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the One-Cycle Target Labeling and Control Reagents Kit protocol (Affymetrix, Santa Clara, USA) from 2 - 2.5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HGU133 Plus 2.0. GeneChips were washed and stained in the Affymetrix GeneChip Fluidic Station.
| | Sample_scan_protocol | GeneChips were scanned using the GCS3000 7G Scanner (Affymetrix).
| | Sample_data_processing | Global background correction, quantile normalization and log2 transformation were carried out using the RMAExpress 4.1 software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wuttig,,Daniela
| | Sample_contact_email | daniela.wuttig@uniklinikum-dresden.de
| | Sample_contact_department | Department of Urology
| | Sample_contact_institute | Dresden, University of Technology
| | Sample_contact_address | Fetscherstr. 74
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM359nnn/GSM359496/suppl/GSM359496.CEL.gz
| | Sample_relation | Reanalyzed by: GSM559724
| | Sample_series_id | GSE14378
| | Sample_series_id | GSE22541
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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