Search results for the GEO ID: GSE14431 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM360340 | GPL1261 |
|
Control replicate1
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-10 week
Weight: 20-25g
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360340
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Vehicle
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360340/suppl/GSM360340.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360341 | GPL1261 |
|
Control replicate2
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-10 week
Weight: 20-25g
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360341
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Vehicle
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360341/suppl/GSM360341.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360342 | GPL1261 |
|
Control replicate3
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-10 week
Weight: 20-25g
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360342
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Vehicle
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360342/suppl/GSM360342.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360343 | GPL1261 |
|
Radiation replicate1
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360343
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360343/suppl/GSM360343.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360344 | GPL1261 |
|
Radiation replicate2
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360344
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360344/suppl/GSM360344.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360345 | GPL1261 |
|
Radiation replicate3
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360345
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360345/suppl/GSM360345.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360346 | GPL1261 |
|
SIMVA-Radiation replicate1
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360346
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks; 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360346/suppl/GSM360346.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360347 | GPL1261 |
|
SIMVA-Radiation replicate2
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360347
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks; 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360347/suppl/GSM360347.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360348 | GPL1261 |
|
SIMVA-Radiation replicate3
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360348
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks; 6 week after one time of 25Gy radiation
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360348/suppl/GSM360348.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360349 | GPL1261 |
|
SIMVA replicate1
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360349
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks;
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360349/suppl/GSM360349.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360350 | GPL1261 |
|
SIMVA replicate2
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360350
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks;
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360350/suppl/GSM360350.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
GSM360351 | GPL1261 |
|
SIMVA replicate3
|
Lung
|
Mouse C57BL/6J
Mouse, male
Age: 8-12 week
Age: 8-12 week
genotype: Wild type
|
Gene expression data from lung tissue of control animal
|
Sample_geo_accession | GSM360351
| Sample_status | Public on Mar 02 2009
| Sample_submission_date | Jan 14 2009
| Sample_last_update_date | Jan 14 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | 10 mg/kg simvastatin via intraperitoneal injection three times a week pre and post irradiation for up to 6 weeks;
| Sample_growth_protocol_ch1 | standard conditions (12h light-dark cycle, 25-27ºC, ~40% humidity)
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse320_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) for ABS_Call; Bioconductor GCRMA package for normalization;
| Sample_platform_id | GPL1261
| Sample_contact_name | Yong,,Huang
| Sample_contact_email | yongh@uchicago.edu
| Sample_contact_phone | (773) 834 0832
| Sample_contact_department | Medicine
| Sample_contact_institute | University of Chicago
| Sample_contact_address | 5841 South Maryland Avenue
| Sample_contact_city | Chicago
| Sample_contact_state | IL
| Sample_contact_zip/postal_code | 60637
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM360nnn/GSM360351/suppl/GSM360351.CEL.gz
| Sample_series_id | GSE14431
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|