Search results for the GEO ID: GSE14449  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM361017 | GPL339 |
|
Mouse 4, Sample:SZ32, Sex:M, Metastasis, Mediastinal LN
|
Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse4, Sample:SZ32, Sex:M, Metastasis, Mediastinal LN
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Mouse4, Sample:SZ32, Sex:M, Metastasis, Mediastinal LN
|
| Sample_geo_accession | GSM361017
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361017/suppl/GSM361017.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361018 | GPL339 |
|
Mouse 1, Sample:SZ20, Sex:M, Metastasis, s.c. met/body wall
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse1, Sample:SZ20, Sex:M, Metastasis, s.c. met/body wall
|
Mouse1, Sample:SZ20, Sex:M, Metastasis, s.c. met/body wall
|
| Sample_geo_accession | GSM361018
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361018/suppl/GSM361018.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361019 | GPL339 |
|
Mouse 3, Sample:SZ26, Sex:M, Metastasis, Mediastinal LN
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
|
Mouse3, Sample:SZ26, Sex:M, Metastasis, Mediastinal LN
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Mouse3, Sample:SZ26, Sex:M, Metastasis, Mediastinal LN
|
| Sample_geo_accession | GSM361019
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361019/suppl/GSM361019.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361020 | GPL339 |
|
Mouse 4, Sample:SZ33, Sex:M, Metastasis, Parietal pleural nodule
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse4, Sample:SZ33, Sex:M, Metastasis, Parietal pleural nodule
|
Mouse4, Sample:SZ33, Sex:M, Metastasis, Parietal pleural nodule
|
| Sample_geo_accession | GSM361020
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361020/suppl/GSM361020.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361021 | GPL339 |
|
Mouse 3, Sample:SZ27, Sex:M, Metastasis, s.c. met
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse3, Sample:SZ27, Sex:M, Metastasis, s.c. met
|
Mouse3, Sample:SZ27, Sex:M, Metastasis, s.c. met
|
| Sample_geo_accession | GSM361021
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361021/suppl/GSM361021.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361022 | GPL339 |
|
Mouse 1, Sample:SZ19, Sex:M, Metastasis, Liver met
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
|
Mouse1, Sample:SZ19, Sex:M, Metastasis, Liver met
|
Mouse1, Sample:SZ19, Sex:M, Metastasis, Liver met
|
| Sample_geo_accession | GSM361022
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361022/suppl/GSM361022.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361023 | GPL339 |
|
Mouse 1, Sample:SZ21, Sex:M, Metastasis, Inguinal met
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse1, Sample:SZ21, Sex:M, Metastasis, Inguinal met
|
Mouse1, Sample:SZ21, Sex:M, Metastasis, Inguinal met
|
| Sample_geo_accession | GSM361023
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361023/suppl/GSM361023.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361024 | GPL339 |
|
Mouse 2, Sample:SZ23, Sex:M, Metastasis, Liver met
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Metastases from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse2, Sample:SZ23, Sex:M, Metastasis, Liver met
|
Mouse2, Sample:SZ23, Sex:M, Metastasis, Liver met
|
| Sample_geo_accession | GSM361024
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361024/suppl/GSM361024.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361025 | GPL339 |
|
Mouse 3, Sample:SZ25, Sex:M, Metastasis, heart met
|
Metastases from p53R172H∆g/+ K-rasLA1/+ mice
|
Mouse3, Sample:SZ25, Sex:M, Metastasis, heart met
|
Mouse3, Sample:SZ25, Sex:M, Metastasis, heart met
|
| Sample_geo_accession | GSM361025
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361025/suppl/GSM361025.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361026 | GPL339 |
|
Mouse 5, Sample:SZ14, Sex:M, Primary lung cancer, Adenocarcinoma
|
Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
|
Mouse5, Sample:SZ14, Sex:M, Primary lung cancer, Adenocarcinoma
|
Mouse5, Sample:SZ14, Sex:M, Primary lung cancer, Adenocarcinoma
|
| Sample_geo_accession | GSM361026
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361026/suppl/GSM361026.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361027 | GPL339 |
|
Mouse 6, Sample:SZ15, Sex:F, Primary lung cancer, Adenocarcinoma
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Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse6, Sample:SZ15, Sex:F, Primary lung cancer, Adenocarcinoma
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Mouse6, Sample:SZ15, Sex:F, Primary lung cancer, Adenocarcinoma
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| Sample_geo_accession | GSM361027
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361027/suppl/GSM361027.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
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GSM361028 | GPL339 |
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Mouse 7, Sample:SZ17, Sex:M, Primary lung cancer, Adenocarcinoma
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Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse7, Sample:SZ17, Sex:M, Primary lung cancer, Adenocarcinoma
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Mouse7, Sample:SZ17, Sex:M, Primary lung cancer, Adenocarcinoma
|
| Sample_geo_accession | GSM361028
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361028/suppl/GSM361028.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361029 | GPL339 |
|
Mouse 2, Sample:SZ22, Sex:M, Primary lung cancer, Adenocarcinoma
|
Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
|
Mouse2, Sample:SZ22, Sex:M, Primary lung cancer, Adenocarcinoma
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Mouse2, Sample:SZ22, Sex:M, Primary lung cancer, Adenocarcinoma
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| Sample_geo_accession | GSM361029
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361029/suppl/GSM361029.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361030 | GPL339 |
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Mouse 4, Sample:SZ31, Sex:M, Primary lung cancer, Adenocarcinoma
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Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse4, Sample:SZ31, Sex:M, Primary lung cancer, Adenocarcinoma
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Mouse4, Sample:SZ31, Sex:M, Primary lung cancer, Adenocarcinoma
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| Sample_geo_accession | GSM361030
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361030/suppl/GSM361030.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361031 | GPL339 |
|
Mouse 1, Sample:SZ18, Sex:M, Primary lung cancer, Adenocarcinoma
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Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse1, Sample:SZ18, Sex:M, Primary lung cancer, Adenocarcinoma
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Mouse1, Sample:SZ18, Sex:M, Primary lung cancer, Adenocarcinoma
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| Sample_geo_accession | GSM361031
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361031/suppl/GSM361031.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
|
GSM361032 | GPL339 |
|
Mouse 3, Sample:SZ24, Sex:M, Primary lung cancer, Adenocarcinoma
|
Primary lung adenocarcinoma from p53R172H∆g/+ K-rasLA1/+ mice
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Mouse3, Sample:SZ24, Sex:M, Primary lung cancer, Adenocarcinoma
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Mouse3, Sample:SZ24, Sex:M, Primary lung cancer, Adenocarcinoma
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| Sample_geo_accession | GSM361032
| | Sample_status | Public on Apr 15 2009
| | Sample_submission_date | Jan 15 2009
| | Sample_last_update_date | Mar 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Primary lung adenocarcinomas and metastases from p53R172H∆g/+ K-rasLA1/+ mice or syngeneic tumors were isolated, carefully dissected to remove the adjacent tissue.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Trizol (Invitrogen) and purified with an RNeasy kit (Qiagen). RNA quality and quantity were evaluated on an Agilent Bioanalyzer following the manufacture’s recommendations (Agilent Technologies).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on Mouse430A GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-WS2v5 (for FS400) or FS450_0001 (for FS450).
| | Sample_scan_protocol | GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
| | Sample_data_processing | The data were analyzed with dChip version2006 using Affymetrix default analysis settings and invariant set as normalization method. The trimmed mean target intensity of each array was arbitrarily set to the bottom 10% of intensity values
| | Sample_platform_id | GPL339
| | Sample_contact_name | Chad,,Creighton
| | Sample_contact_email | creighto@bcm.tmc.edu
| | Sample_contact_department | Biostatistics, Ducan Cancer Center
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza, Mail Stop: BCM305
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM361nnn/GSM361032/suppl/GSM361032.CEL.gz
| | Sample_series_id | GSE14449
| | Sample_series_id | GSE14459
| | Sample_data_row_count | 22690
| | |
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