Search results for the GEO ID: GSE14537  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM363763 | GPL570 |
|
MOCK transfection lysate RNA, biological replicate 1
|
Mock transfection 1, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363763
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363763/suppl/gsm363763.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363764 | GPL570 |
|
MOCK transfection AGO2-IP RNA, biological replicate 1, technical replicate 1
|
Mock transfection 1, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of mock-transfected cells
|
| Sample_geo_accession | GSM363764
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363764/suppl/gsm363764.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363765 | GPL570 |
|
MOCK transfection AGO2-IP RNA, biological replicate 1, technical replicate 2
|
Mock transfection 1, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of mock-transfected cells
|
| Sample_geo_accession | GSM363765
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363765/suppl/gsm363765.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363766 | GPL570 |
|
MOCK transfection lysate RNA, biological replicate 2
|
Mock transfection 2, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363766
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363766/suppl/gsm363766.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363767 | GPL570 |
|
MOCK transfection AGO2-IP RNA, biological replicate 2, technical replicate 1
|
Mock transfection 2, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of mock-transfected cells
|
| Sample_geo_accession | GSM363767
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363767/suppl/gsm363767.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363768 | GPL570 |
|
MOCK transfection AGO2-IP RNA, biological replicate 2, technical replicate 2
|
Mock transfection 2, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of mock-transfected cells
|
| Sample_geo_accession | GSM363768
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363768/suppl/gsm363768.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363769 | GPL570 |
|
miR-7 transfection lysate RNA, biological replicate 1
|
miR-7 transfection 1, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363769
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363769/suppl/gsm363769.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363770 | GPL570 |
|
miR-7 transfection AGO2-IP RNA, biological replicate 1, technical replicate 1
|
miR-7 transfection 1, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-7-transfected cells
|
| Sample_geo_accession | GSM363770
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363770/suppl/gsm363770.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363771 | GPL570 |
|
miR-7 transfection AGO2-IP RNA, biological replicate 1, technical replicate 2
|
miR-7 transfection 1, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-7-transfected cells
|
| Sample_geo_accession | GSM363771
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363771/suppl/gsm363771.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363772 | GPL570 |
|
miR-7 transfection lysate RNA, biological replicate 2
|
miR-7 transfection 2, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363772
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363772/suppl/gsm363772.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363773 | GPL570 |
|
miR-7 transfection AGO2-IP RNA, biological replicate 2, technical replicate 1
|
miR-7 transfection 2, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-7-transfected cells
|
| Sample_geo_accession | GSM363773
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363773/suppl/gsm363773.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363774 | GPL570 |
|
miR-7 transfection AGO2-IP RNA, biological replicate 2, technical replicate 2
|
miR-7 transfection 2, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-7-transfected cells
|
| Sample_geo_accession | GSM363774
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363774/suppl/gsm363774.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363775 | GPL570 |
|
miR-124 transfection lysate RNA, biological replicate 1
|
miR-124 transfection 1, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363775
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363775/suppl/gsm363775.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363776 | GPL570 |
|
miR-124 transfection AGO2-IP RNA, biological replicate 1, technical replicate 1
|
miR-124 transfection 1, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-124-transfected cells
|
| Sample_geo_accession | GSM363776
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363776/suppl/gsm363776.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363777 | GPL570 |
|
miR-124 transfection AGO2-IP RNA, biological replicate 1, technical replicate 2
|
miR-124 transfection 1, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-124-transfected cells
|
| Sample_geo_accession | GSM363777
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363777/suppl/gsm363777.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363778 | GPL570 |
|
miR-124 transfection lysate RNA, biological replicate 2
|
miR-124 transfection 2, total RNA
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA of mock-transfected cells
|
| Sample_geo_accession | GSM363778
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363778/suppl/gsm363778.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363779 | GPL570 |
|
miR-124 transfection AGO2-IP RNA, biological replicate 2, technical replicate 1
|
miR-124 transfection 2, AGO2-IP total RNA 1
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-124-transfected cells
|
| Sample_geo_accession | GSM363779
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363779/suppl/gsm363779.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
GSM363780 | GPL570 |
|
miR-124 transfection AGO2-IP RNA, biological replicate 2, technical replicate 2
|
miR-124 transfection 2, AGO2-IP total RNA 2
|
FLPin HEK 293 cells stably transfected with FLAG/HA-AGO2
|
Gene expression data from total RNA AGO2-immunoprecipitate of miR-124-transfected cells
|
| Sample_geo_accession | GSM363780
| | Sample_status | Public on Jan 27 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | FLAG/HA-AGO2 was immunoprecipitated with anti-FLAG M2 agarose
| | Sample_growth_protocol_ch1 | HEK293 cells were grown in DMEM suppl. with FBS and 2mM Glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After proteinase K treatment extraction of total RNA was performed using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle Eukaryotic Target Labeling Assay protocol from total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | CEL files were imported into R / BioConductor using the affy package. The raw intensities were corrected using gcRMA. The 18 arrays were finally quantile-normalized.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Markus,,Landthaler
| | Sample_contact_email | landthm@rockefeller.edu
| | Sample_contact_institute | Rockefeller University
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363780/suppl/gsm363780.cel.gz
| | Sample_series_id | GSE14537
| | Sample_data_row_count | 54675
| | |
|
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