Search results for the GEO ID: GSE14539  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM363788 | GPL339 |
|
KO d0 250
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363788
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363788/suppl/GSM363788.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363789 | GPL339 |
|
KO d2 250
|
Liver day 2 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363789
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363789/suppl/GSM363789.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363790 | GPL339 |
|
KO d0 254
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363790
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363790/suppl/GSM363790.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363791 | GPL339 |
|
KO d2 254
|
Liver day 2 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363791
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363791/suppl/GSM363791.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363792 | GPL339 |
|
KO d0 258
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363792
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363792/suppl/GSM363792.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363793 | GPL339 |
|
KO d2 258
|
Liver day 2 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363793
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363793/suppl/GSM363793.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363794 | GPL339 |
|
KO d0 312
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363794
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363794/suppl/GSM363794.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363795 | GPL339 |
|
KO d6 312
|
Liver day 6 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363795
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363795/suppl/GSM363795.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363796 | GPL339 |
|
KO d0 332
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363796
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363796/suppl/GSM363796.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363797 | GPL339 |
|
KO d6 332
|
Liver day 6 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363797
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363797/suppl/GSM363797.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363798 | GPL339 |
|
KO d0 337
|
Liver day 0 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363798
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363798/suppl/GSM363798.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363799 | GPL339 |
|
KO d6 337
|
Liver day 6 post PHx
|
strain:FVB129P2; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363799
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363799/suppl/GSM363799.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363800 | GPL339 |
|
control d0 263
|
Liver day 0 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363800
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363800/suppl/GSM363800.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363801 | GPL339 |
|
control d2 263
|
Liver day 2 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363801
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363801/suppl/GSM363801.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363802 | GPL339 |
|
control d2 264
|
Liver day 2 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363802
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363802/suppl/GSM363802.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363803 | GPL339 |
|
control d0 265
|
Liver day 0 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363803
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363803/suppl/GSM363803.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363804 | GPL339 |
|
control d2 265
|
Liver day 2 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363804
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363804/suppl/GSM363804.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363805 | GPL339 |
|
control d0 303
|
Liver day 0 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363805
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363805/suppl/GSM363805.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363806 | GPL339 |
|
control d6 303
|
Liver day 6 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363806
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363806/suppl/GSM363806.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363807 | GPL339 |
|
control d6 393
|
Liver day 6 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363807
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363807/suppl/GSM363807.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
GSM363808 | GPL339 |
|
control d6 392
|
Liver day 6 post PHx
|
strain:FVB129P2/FVBNJ; gender:male; Age: 9 months; Tissue: liver;
|
none
|
| Sample_geo_accession | GSM363808
| | Sample_status | Public on Jan 03 2010
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Jan 03 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total RNA was isolated from liver samples of 9-month-old mice obtained at different time points after 30% partial hepatectomy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin-pseudouridine
| | Sample_label_protocol_ch1 | 3-prime IVT labeling protocol
| | Sample_hyb_protocol | 3-prime IVT hybridization protocol
| | Sample_scan_protocol | MOE430A protocol for GCF3000
| | Sample_data_processing | Array data were normalized by the GCRMA algorithm using R and bioconductor (http://www.bioconductor.org/).Gene and Gene Ontology (GO) annotations were determined for each probe set according to the annotation files published in the Affymetrix website (www.affymetrix.com). Log 2 normalized expression values, after thresholding and filtering, were submitted to unsupervised cluster analysis using Cluster software 6. Paired t-test, and two-way ANOVA for the factors day and strain were performed using Matlab software (Mathworks Inc.).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Reba,,Condiotti
| | Sample_contact_email | reba@hadassah.org.il
| | Sample_contact_department | Goldyne Savad Institute of Gene Therapy
| | Sample_contact_institute | Hadassah Medical Center
| | Sample_contact_address | P.O.B. 12000
| | Sample_contact_city | Jerusalem
| | Sample_contact_zip/postal_code | 91120
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363808/suppl/GSM363808.CEL.gz
| | Sample_series_id | GSE14539
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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