Search results for the GEO ID: GSE14548  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM363912 | GPL1352 |
|
102-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363912
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363912/suppl/GSM363912.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363913 | GPL1352 |
|
102-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363913
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363913/suppl/GSM363913.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363914 | GPL1352 |
|
102-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363914
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363914/suppl/GSM363914.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363915 | GPL1352 |
|
102-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363915
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363915/suppl/GSM363915.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363916 | GPL1352 |
|
102-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363916
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363916/suppl/GSM363916.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363917 | GPL1352 |
|
102-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363917
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363917/suppl/GSM363917.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363918 | GPL1352 |
|
121-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363918
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363918/suppl/GSM363918.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363919 | GPL1352 |
|
121-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363919
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363919/suppl/GSM363919.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363920 | GPL1352 |
|
121-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363920
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363920/suppl/GSM363920.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363921 | GPL1352 |
|
121-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363921
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363921/suppl/GSM363921.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363922 | GPL1352 |
|
121-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363922
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363922/suppl/GSM363922.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363923 | GPL1352 |
|
121-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363923
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363923/suppl/GSM363923.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363924 | GPL1352 |
|
131-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363924
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363924/suppl/GSM363924.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363925 | GPL1352 |
|
131-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363925
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363925/suppl/GSM363925.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363926 | GPL1352 |
|
131-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363926
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363926/suppl/GSM363926.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363927 | GPL1352 |
|
131-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363927
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363927/suppl/GSM363927.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363928 | GPL1352 |
|
133-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363928
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363928/suppl/GSM363928.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363929 | GPL1352 |
|
133-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363929
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363929/suppl/GSM363929.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363930 | GPL1352 |
|
133-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363930
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363930/suppl/GSM363930.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363931 | GPL1352 |
|
133-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363931
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363931/suppl/GSM363931.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363932 | GPL1352 |
|
148-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363932
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363932/suppl/GSM363932.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363933 | GPL1352 |
|
148-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363933
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363933/suppl/GSM363933.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363934 | GPL1352 |
|
148-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363934
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363934/suppl/GSM363934.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363935 | GPL1352 |
|
148-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363935
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363935/suppl/GSM363935.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363936 | GPL1352 |
|
153-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363936
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363936/suppl/GSM363936.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363937 | GPL1352 |
|
153-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363937
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363937/suppl/GSM363937.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363938 | GPL1352 |
|
153-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363938
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363938/suppl/GSM363938.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363939 | GPL1352 |
|
153-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363939
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363939/suppl/GSM363939.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363940 | GPL1352 |
|
169-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363940
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363940/suppl/GSM363940.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363941 | GPL1352 |
|
169-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363941
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363941/suppl/GSM363941.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363942 | GPL1352 |
|
169-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363942
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363942/suppl/GSM363942.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363943 | GPL1352 |
|
169-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:II
|
breast cancer
|
| Sample_geo_accession | GSM363943
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363943/suppl/GSM363943.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363944 | GPL1352 |
|
178-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363944
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363944/suppl/GSM363944.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363945 | GPL1352 |
|
178-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363945
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363945/suppl/GSM363945.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363946 | GPL1352 |
|
178-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363946
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363946/suppl/GSM363946.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363947 | GPL1352 |
|
178-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363947
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363947/suppl/GSM363947.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363948 | GPL1352 |
|
179-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363948
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363948/suppl/GSM363948.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363949 | GPL1352 |
|
179-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363949
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363949/suppl/GSM363949.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363950 | GPL1352 |
|
179-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363950
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363950/suppl/GSM363950.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363951 | GPL1352 |
|
179-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363951
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363951/suppl/GSM363951.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363952 | GPL1352 |
|
180-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363952
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363952/suppl/GSM363952.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363953 | GPL1352 |
|
180-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363953
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363953/suppl/GSM363953.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363954 | GPL1352 |
|
180-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363954
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363954/suppl/GSM363954.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363955 | GPL1352 |
|
180-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363955
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363955/suppl/GSM363955.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363956 | GPL1352 |
|
44-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363956
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363956/suppl/GSM363956.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363957 | GPL1352 |
|
44-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363957
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363957/suppl/GSM363957.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363958 | GPL1352 |
|
44-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363958
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363958/suppl/GSM363958.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363959 | GPL1352 |
|
44-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363959
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363959/suppl/GSM363959.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363960 | GPL1352 |
|
44-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363960
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363960/suppl/GSM363960.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363961 | GPL1352 |
|
44-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363961
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363961/suppl/GSM363961.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363962 | GPL1352 |
|
45-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363962
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363962/suppl/GSM363962.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363963 | GPL1352 |
|
45-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363963
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363963/suppl/GSM363963.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363964 | GPL1352 |
|
45-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363964
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363964/suppl/GSM363964.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363965 | GPL1352 |
|
45-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363965
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363965/suppl/GSM363965.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363966 | GPL1352 |
|
45-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363966
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363966/suppl/GSM363966.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363967 | GPL1352 |
|
79-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363967
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363967/suppl/GSM363967.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363968 | GPL1352 |
|
79-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363968
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363968/suppl/GSM363968.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363969 | GPL1352 |
|
79-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363969
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363969/suppl/GSM363969.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363970 | GPL1352 |
|
79-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363970
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363970/suppl/GSM363970.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363971 | GPL1352 |
|
79-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:I
|
breast cancer
|
| Sample_geo_accession | GSM363971
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363971/suppl/GSM363971.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363972 | GPL1352 |
|
96-N
|
breast cancer biopsy
|
normal epithelium
|
breast cancer
|
| Sample_geo_accession | GSM363972
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363972/suppl/GSM363972.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363973 | GPL1352 |
|
96-IS
|
breast cancer biopsy
|
DCIS epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363973
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363973/suppl/GSM363973.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363974 | GPL1352 |
|
96-INV
|
breast cancer biopsy
|
invasive epithelium, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363974
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363974/suppl/GSM363974.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363975 | GPL1352 |
|
96-NSS
|
breast cancer biopsy
|
normal stroma
|
breast cancer
|
| Sample_geo_accession | GSM363975
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363975/suppl/GSM363975.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363976 | GPL1352 |
|
96-ISS
|
breast cancer biopsy
|
DCIS stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363976
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363976/suppl/GSM363976.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
GSM363977 | GPL1352 |
|
96-INVS
|
breast cancer biopsy
|
invasive stroma, tumor grade:III
|
breast cancer
|
| Sample_geo_accession | GSM363977
| | Sample_status | Public on Feb 04 2009
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | laser capture microdissected
| | Sample_growth_protocol_ch1 | fresh frozen primary breast cancer biopsy
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Picopure RNA extraction kit (Arcturus BioScience, Inc.)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
| | Sample_hyb_protocol | Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
| | Sample_scan_protocol | GeneChips were scannned using GeneChip Scanner 3000.
| | Sample_data_processing | Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
| | Sample_platform_id | GPL1352
| | Sample_contact_name | Xiao-Jun,,Ma
| | Sample_contact_email | xiao-jun.ma@biotheranostics.com
| | Sample_contact_institute | bioTheranostics, Inc.
| | Sample_contact_address | 11025 Roselle St, Suite 200
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | CA, 92121
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM363nnn/GSM363977/suppl/GSM363977.CEL.gz
| | Sample_series_id | GSE14548
| | Sample_data_row_count | 61359
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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