Search results for the GEO ID: GSE14556  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM364116 | GPL341 |
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TGFbeta1
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Rattus norvegicus - subventricular zone - stimulated
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age: 3 months
tissue: subventricular zone
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Gene expression data from adult rat subventricular zone cells
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| Sample_geo_accession | GSM364116
| | Sample_status | Public on May 10 2011
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | May 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | During this time period, cells were treated with either HCl/BSA (control) or 10 ng/ml TGFbeta1 (TGFbeta1) 3 times per week.
| | Sample_growth_protocol_ch1 | Adult rat subventricular zone cells were grown under proliferating conditions in the presence of EGF and FGF for 7 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed with Rneasy Midi Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on GeneChip Rat Expression Set 230 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Dietrich,,Trümbach
| | Sample_contact_email | dietrich.truembach@helmholtz-muenchen.de
| | Sample_contact_department | Institute for Developmental Genetics
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Ingolstädter Landstraße 1
| | Sample_contact_city | München-Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM364nnn/GSM364116/suppl/GSM364116.CEL.gz
| | Sample_series_id | GSE14556
| | Sample_data_row_count | 15923
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GSM364117 | GPL341 |
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control
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Rattus norvegicus - subventricular zone - unstimulated
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age: 3 months
tissue: subventricular zone
|
Gene expression data from adult rat subventricular zone cells
|
| Sample_geo_accession | GSM364117
| | Sample_status | Public on May 10 2011
| | Sample_submission_date | Jan 23 2009
| | Sample_last_update_date | May 10 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | During this time period, cells were treated with either HCl/BSA (control) or 10 ng/ml TGFbeta1 (TGFbeta1) 3 times per week.
| | Sample_growth_protocol_ch1 | Adult rat subventricular zone cells were grown under proliferating conditions in the presence of EGF and FGF for 7 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed with Rneasy Midi Kit (Qiagen) according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on GeneChip Rat Expression Set 230 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Dietrich,,Trümbach
| | Sample_contact_email | dietrich.truembach@helmholtz-muenchen.de
| | Sample_contact_department | Institute for Developmental Genetics
| | Sample_contact_institute | German Research Center for Environmental Health
| | Sample_contact_address | Ingolstädter Landstraße 1
| | Sample_contact_city | München-Neuherberg
| | Sample_contact_zip/postal_code | 85764
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM364nnn/GSM364117/suppl/GSM364117.CEL.gz
| | Sample_series_id | GSE14556
| | Sample_data_row_count | 15923
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