Search results for the GEO ID: GSE14678  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM366551 | GPL1261 |
|
Young C57-01, chip
|
Total Muscle, Skeletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S404
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_405
Short description: Gastrocnemius from normal C57B1/6 mice
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366551
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366551/suppl/GSM366551.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366551/suppl/GSM366551.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366551/suppl/GSM366551.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
| | |
|
GSM366552 | GPL1261 |
|
Young C57-02, chip
|
Total Muscle, Skeletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S404
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_405
Short description: Gastrocnemius from normal C57B1/6 mice
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366552
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366552/suppl/GSM366552.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366552/suppl/GSM366552.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366552/suppl/GSM366552.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
| | |
|
GSM366553 | GPL1261 |
|
Young C57-03, chip
|
Total Muscle, Skeletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S404
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_405
Short description: Gastrocnemius from normal C57B1/6 mice
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366553
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366553/suppl/GSM366553.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366553/suppl/GSM366553.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366553/suppl/GSM366553.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
| | |
|
GSM366554 | GPL1261 |
|
Aged C57-51, chip
|
Total Muscle, Seletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S405
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_406
Short description: Gastrocnemius from normal C57b1/6 mice.
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366554
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366554/suppl/GSM366554.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366554/suppl/GSM366554.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366554/suppl/GSM366554.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
| | |
|
GSM366555 | GPL1261 |
|
Aged C57-52, chip
|
Total Muscle, Seletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S405
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_406
Short description: Gastrocnemius from normal C57b1/6 mice.
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366555
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366555/suppl/GSM366555.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366555/suppl/GSM366555.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366555/suppl/GSM366555.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
| | |
|
GSM366556 | GPL1261 |
|
Aged C57-53, chip
|
Total Muscle, Seletal Muscle Gastrocnemius
|
strain: C57B1/6
gender: Male
karyotype: Normal
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.stembase.ca). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by System Administrator (OGCInfo@ohri.ca; ) for analysis.
Stembase Experiment ID: E246
Stembase Experiment ID link: http://www.stembase.ca/?path=/browse/experiment&id=246
SCGP Sample ID: S405
SCGP Sample ID link: http://www.stembase.ca/?path=/browse/experiment&id=246#SAMPLE_406
Short description: Gastrocnemius from normal C57b1/6 mice.
Estimated purity: 95-99%
RNA concentration: 0.05 ug/ul
Sample volume: 5 ul
|
| Sample_geo_accession | GSM366556
| | Sample_status | Public on Feb 26 2009
| | Sample_submission_date | Feb 02 2009
| | Sample_last_update_date | Feb 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: RNeasy
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from the total RNA according to the Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix)
| | Sample_hyb_protocol | Following fragmentation, cRNA was hybridized on the GeneChip Array and the GeneChips were washed and stained in the Affymetrix Fluidics Station 450 according to the standard Affymetrix protocol (Expression Analysis Technical Manual Rev. 2, 2005-2006, Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip 3000 7G scanner.
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpha2=0.06
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366556/suppl/GSM366556.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366556/suppl/GSM366556.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366556/suppl/GSM366556.EXP.gz
| | Sample_series_id | GSE14678
| | Sample_data_row_count | 45101
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