Search results for the GEO ID: GSE14701  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM366970 | GPL570 |
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PaTu8988s replicate 1
|
pancreatic cancer cell line PaTu8988s
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pancreatic cancer cell line PaTu8988s
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gene expression data from pancreatic cancer cell line PaTu8988s
|
| Sample_geo_accession | GSM366970
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366970/suppl/GSM366970.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
| | |
|
GSM366971 | GPL570 |
|
PaTu8988s replicate 2
|
pancreatic cancer cell line PaTu8988s
|
pancreatic cancer cell line PaTu8988s
|
gene expression data from pancreatic cancer cell line PaTu8988s
|
| Sample_geo_accession | GSM366971
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366971/suppl/GSM366971.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
| | |
|
GSM366972 | GPL570 |
|
PaTu8988s replicate 3
|
pancreatic cancer cell line PaTu8988s
|
pancreatic cancer cell line PaTu8988s
|
gene expression data from pancreatic cancer cell line PaTu8988s
|
| Sample_geo_accession | GSM366972
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366972/suppl/GSM366972.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
| | |
|
GSM366973 | GPL570 |
|
PaTu8988t replicate 1
|
pancreatic cancer cell line PaTu8988t
|
pancreatic cancer cell line PaTu8988t
|
gene expression data from pancreatic cancer cell line PaTu8988t
|
| Sample_geo_accession | GSM366973
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366973/suppl/GSM366973.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
| | |
|
GSM366974 | GPL570 |
|
PaTu8988t replicate 2
|
pancreatic cancer cell line PaTu8988t
|
pancreatic cancer cell line PaTu8988t
|
gene expression data from pancreatic cancer cell line PaTu8988t
|
| Sample_geo_accession | GSM366974
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366974/suppl/GSM366974.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
| | |
|
GSM366975 | GPL570 |
|
PaTu8988t replicate 3
|
pancreatic cancer cell line PaTu8988t
|
pancreatic cancer cell line PaTu8988t
|
gene expression data from pancreatic cancer cell line PaTu8988t
|
| Sample_geo_accession | GSM366975
| | Sample_status | Public on Jan 10 2010
| | Sample_submission_date | Feb 03 2009
| | Sample_last_update_date | Feb 04 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were grown to 70-80% confluence before RNA extraction.
| | Sample_growth_protocol_ch1 | Cell lines were maintained in DMEM with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | extraction of total RNA was performed using TRIzol solution(Gibco BRL) according to the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using GeneChip Scanner 3000.
| | Sample_data_processing | RMA robust multi-array analysis using R
| | Sample_platform_id | GPL570
| | Sample_contact_name | yaohe,,Wang
| | Sample_contact_email | yaohe.wang@qmul.ac.uk
| | Sample_contact_institute | Institute of Cancer
| | Sample_contact_address | Charterhouse Square
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | EC1M 6BQ
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM366nnn/GSM366975/suppl/GSM366975.CEL.gz
| | Sample_series_id | GSE14701
| | Sample_data_row_count | 54675
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