Search results for the GEO ID: GSE14773  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM368860 | GPL570 |
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HT29 parental control(1)
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colon cancer cells
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cell line: HT29, colon cancer cells
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HT29, colon cancer cells
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| Sample_geo_accession | GSM368860
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | the medium for this cell line is dmem. to make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10%.
| | Sample_growth_protocol_ch1 | atmosphere: air, 95%; carbon dioxide (CO2), 5%
| | Sample_growth_protocol_ch1 | temperature: 37.0°C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368860/suppl/GSM368860.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368860/suppl/GSM368860.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
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GSM368863 | GPL570 |
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HT29 parental control (2)
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Colon cancer cells
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cell line: HT29, colon cancer cells
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HT29, colon cancer cells
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| Sample_geo_accession | GSM368863
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | The medium for this cell line is DMEM. To make the complete growth medium, add the following components to the base medium: fetal bovine serum to a final concentration of 10%.
| | Sample_growth_protocol_ch1 | atmosphere: air, 95%; carbon dioxide (CO2), 5%
| | Sample_growth_protocol_ch1 | temperature: 37.0°C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368863/suppl/GSM368863.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368863/suppl/GSM368863.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
|
GSM368864 | GPL570 |
|
HT29 1st sphere(1)
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Colon cancer cells
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cell line: HT29, cancer spheres
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HT29 cancer spheres
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| Sample_geo_accession | GSM368864
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in tumor sphere medium consisting of DMEM-F12 (Gibco) with N2 Plus Supplement (R＆D, Minneapolis, MN, USA ), 10 ng/ml recombinant bFGF (PeproTech Asia, Rehovot, Israel), 10 ng/ml EGF (PeproTech Asia, Rehovot, Israel) and 1% penicillin-streptomycine (Gibco).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368864/suppl/GSM368864.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368864/suppl/GSM368864.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
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GSM368865 | GPL570 |
|
HT29 1st spheres (2)
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colon cancer cells
|
cell line: HT29, cancer spheres
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HT29 cancer spheres
|
| Sample_geo_accession | GSM368865
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were cultured in tumor sphere medium consisting of DMEM-F12 (Gibco) with N2 Plus Supplement (R＆D, Minneapolis, MN, USA ), 10 ng/ml recombinant bFGF (PeproTech Asia, Rehovot, Israel), 10 ng/ml EGF (PeproTech Asia, Rehovot, Israel) and 1% penicillin-streptomycine (Gibco).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368865/suppl/GSM368865.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368865/suppl/GSM368865.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
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GSM368866 | GPL570 |
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SW480 Vector (1)
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SW480, colon cancer cells
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cell line: SW480-Vector, vector control treated stable line
|
SW480-Vector, vector control treated stable line
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| Sample_geo_accession | GSM368866
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | SW480 cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM-high glucose; Gibco, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS, Gibco)
| | Sample_growth_protocol_ch1 | atmosphere: air, 95%; carbon dioxide (CO2), 5%
| | Sample_growth_protocol_ch1 | temperature: 37.0°
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368866/suppl/GSM368866.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368866/suppl/GSM368866.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
|
GSM368867 | GPL570 |
|
SW480 Vector (2)
|
SW480, colon cancer cells
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cell line: SW480-Vector, vector control treated stable line
|
SW480-Vector, vector control treated stable line
|
| Sample_geo_accession | GSM368867
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM-high glucose; Gibco, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS, Gibco)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368867/suppl/GSM368867.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368867/suppl/GSM368867.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
| | |
|
GSM368869 | GPL570 |
|
SW480 Snail (2)
|
SW480, colon cancer cell
|
cell line: SW480-Snail, Snail expressing stable line
|
SW480-Snail, Snail expressing stable line
|
| Sample_geo_accession | GSM368869
| | Sample_status | Public on Oct 25 2011
| | Sample_submission_date | Feb 10 2009
| | Sample_last_update_date | Oct 25 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM-high glucose; Gibco, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS, Gibco)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix procedures
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA through R based affy module
| | Sample_platform_id | GPL570
| | Sample_contact_name | Wei-Lun,,Hwang
| | Sample_contact_email | a85296658@yahoo.com.tw
| | Sample_contact_department | Institute of biochemistry and molecular biology
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No.155, Sec.2, Linong Street
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368869/suppl/GSM368869.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM368nnn/GSM368869/suppl/GSM368869.CHP.gz
| | Sample_series_id | GSE14773
| | Sample_data_row_count | 54675
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