Search results for the GEO ID: GSE14825  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM371102 | GPL570 |
|
RD, rep1
|
RD cells infected with control vector
|
cell line: RD cells
infection: control vector
|
Gene expression data from RD cells infected with control vector.
|
| Sample_geo_accession | GSM371102
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371102/suppl/GSM371102.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
GSM371103 | GPL570 |
|
RD, rep2
|
RD cells infected with control vector
|
cell line: RD cells
infection: control vector
|
Gene expression data from RD cells infected with control vector.
|
| Sample_geo_accession | GSM371103
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371103/suppl/GSM371103.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
GSM371104 | GPL570 |
|
RD, rep3
|
RD cells infected with control vector
|
cell line: RD cells
infection: control vector
|
Gene expression data from RD cells infected with control vector.
|
| Sample_geo_accession | GSM371104
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371104/suppl/GSM371104.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
GSM371105 | GPL570 |
|
RD MD-E, rep1
|
RD cells infected with retrovirus expressing MyoD~E heterodimers
|
cell line: RD cells
infection: retrovirus expressing MyoD~E heterodimers
|
Gene expression data from RD cells infected with retroviral vector expressing MyoD~E heterodimers
|
| Sample_geo_accession | GSM371105
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371105/suppl/GSM371105.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
GSM371106 | GPL570 |
|
RD MD-E, rep2
|
RD cells infected with retrovirus expressing MyoD~E heterodimers
|
cell line: RD cells
infection: retrovirus expressing MyoD~E heterodimers
|
Gene expression data from RD cells infected with retroviral vector expressing MyoD~E heterodimers
|
| Sample_geo_accession | GSM371106
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371106/suppl/GSM371106.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
GSM371107 | GPL570 |
|
RD MD-E, rep3
|
RD cells infected with retrovirus expressing MyoD~E heterodimers
|
cell line: RD cells
infection: retrovirus expressing MyoD~E heterodimers
|
Gene expression data from RD cells infected with retroviral vector expressing MyoD~E heterodimers
|
| Sample_geo_accession | GSM371107
| | Sample_status | Public on Feb 14 2009
| | Sample_submission_date | Feb 13 2009
| | Sample_last_update_date | Feb 13 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | RD cells were retrovirally infected with either MyoD~E heterodimer or an empty control vector, selected for 48 hours in the presence of 1 ug/mL puromycin, and then placed in DMEM media supplemented with 1%Horse serum, Insulin and Transferrin for 24 hours.
| | Sample_growth_protocol_ch1 | RD cells were grown in DMEM media supplemented with 10% Bovine Calf Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were prepared using Qiagen RNeasy Mini Kit according to the manufacture's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were normalized by RMA using the Affy package of Bioconductor
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371107/suppl/GSM371107.CEL.gz
| | Sample_series_id | GSE14825
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
