Result

Search results for the GEO ID: GSE14841

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM371301

GPL570

Jejunal biopsy, baseline, rep1

Jejunal biopsy, d-IBS, baseline

tissue: jejunal mucosa location: 10 cm from Treitz disease: diarrhea-IBS

Baseline. Replicate 1 of 5.

Sample_geo_accession	GSM371301
Sample_status	Public on Feb 14 2009
Sample_submission_date	Feb 13 2009
Sample_last_update_date	Feb 13 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Biopsies were placed in RNA later solution and stored at -80ºC until processed.
Sample_growth_protocol_ch1	Jejunal biopsies were obtained using the Watson's capsule in all participants. The instrument was orally inserted under fluoroscopic control 5 to 10 cm distal to the Treitz’s angle. Then, a tissue sample was obtained by suction with a 50 ml syringe.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Extraction of total RNA was performed using the Rneasy mini kit (Qiagen) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
Sample_hyb_protocol	Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 60ºC on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0. Raw expression values obtained directly from .CEL files were preprocessed using the RMA method. These normalized values were the basis for all the analyses.
Sample_platform_id	GPL570
Sample_contact_name	Cristina,,Martinez
Sample_contact_email	crismart@ir.vhebron.net
Sample_contact_department	Digestive diseases research unit
Sample_contact_institute	Institut de Recerca HUVH
Sample_contact_address	Paseo Valle Hebron 119-129
Sample_contact_city	Barcelona
Sample_contact_zip/postal_code	08035
Sample_contact_country	Spain
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371301/suppl/GSM371301.CEL.gz
Sample_series_id	GSE14841
Sample_series_id	GSE14842
Sample_data_row_count	54613

GSM371302

GPL570

Jejunal biopsy, baseline, rep2

Jejunal biopsy, d-IBS, baseline

tissue: jejunal mucosa location: 10 cm from Treitz disease: diarrhea-IBS

Baseline. Replicate 2 of 5.

Sample_geo_accession	GSM371302
Sample_status	Public on Feb 14 2009
Sample_submission_date	Feb 13 2009
Sample_last_update_date	Feb 13 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Biopsies were placed in RNA later solution and stored at -80ºC until processed.
Sample_growth_protocol_ch1	Jejunal biopsies were obtained using the Watson's capsule in all participants. The instrument was orally inserted under fluoroscopic control 5 to 10 cm distal to the Treitz’s angle. Then, a tissue sample was obtained by suction with a 50 ml syringe.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Extraction of total RNA was performed using the Rneasy mini kit (Qiagen) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
Sample_hyb_protocol	Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 60ºC on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0. Raw expression values obtained directly from .CEL files were preprocessed using the RMA method. These normalized values were the basis for all the analyses.
Sample_platform_id	GPL570
Sample_contact_name	Cristina,,Martinez
Sample_contact_email	crismart@ir.vhebron.net
Sample_contact_department	Digestive diseases research unit
Sample_contact_institute	Institut de Recerca HUVH
Sample_contact_address	Paseo Valle Hebron 119-129
Sample_contact_city	Barcelona
Sample_contact_zip/postal_code	08035
Sample_contact_country	Spain
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371302/suppl/GSM371302.CEL.gz
Sample_series_id	GSE14841
Sample_series_id	GSE14842
Sample_data_row_count	54613

GSM371303

GPL570

Jejunal biopsy, baseline, rep3

Jejunal biopsy, d-IBS, baseline

tissue: jejunal mucosa location: 10 cm from Treitz disease: diarrhea-IBS

Baseline. Replicate 3 of 5.

Sample_geo_accession	GSM371303
Sample_status	Public on Feb 14 2009
Sample_submission_date	Feb 13 2009
Sample_last_update_date	Feb 13 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Biopsies were placed in RNA later solution and stored at -80ºC until processed.
Sample_growth_protocol_ch1	Jejunal biopsies were obtained using the Watson's capsule in all participants. The instrument was orally inserted under fluoroscopic control 5 to 10 cm distal to the Treitz’s angle. Then, a tissue sample was obtained by suction with a 50 ml syringe.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Extraction of total RNA was performed using the Rneasy mini kit (Qiagen) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
Sample_hyb_protocol	Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 60ºC on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0. Raw expression values obtained directly from .CEL files were preprocessed using the RMA method. These normalized values were the basis for all the analyses.
Sample_platform_id	GPL570
Sample_contact_name	Cristina,,Martinez
Sample_contact_email	crismart@ir.vhebron.net
Sample_contact_department	Digestive diseases research unit
Sample_contact_institute	Institut de Recerca HUVH
Sample_contact_address	Paseo Valle Hebron 119-129
Sample_contact_city	Barcelona
Sample_contact_zip/postal_code	08035
Sample_contact_country	Spain
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371303/suppl/GSM371303.CEL.gz
Sample_series_id	GSE14841
Sample_series_id	GSE14842
Sample_data_row_count	54613

GSM371304

GPL570

Jejunal biopsy, baseline, rep4

Jejunal biopsy, d-IBS, baseline

tissue: jejunal mucosa location: 10 cm from Treitz disease: diarrhea-IBS

Baseline. Replicate 4 of 5.

Sample_geo_accession	GSM371304
Sample_status	Public on Feb 14 2009
Sample_submission_date	Feb 13 2009
Sample_last_update_date	Feb 13 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Biopsies were placed in RNA later solution and stored at -80ºC until processed.
Sample_growth_protocol_ch1	Jejunal biopsies were obtained using the Watson's capsule in all participants. The instrument was orally inserted under fluoroscopic control 5 to 10 cm distal to the Treitz’s angle. Then, a tissue sample was obtained by suction with a 50 ml syringe.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Extraction of total RNA was performed using the Rneasy mini kit (Qiagen) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
Sample_hyb_protocol	Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 60ºC on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0. Raw expression values obtained directly from .CEL files were preprocessed using the RMA method. These normalized values were the basis for all the analyses.
Sample_platform_id	GPL570
Sample_contact_name	Cristina,,Martinez
Sample_contact_email	crismart@ir.vhebron.net
Sample_contact_department	Digestive diseases research unit
Sample_contact_institute	Institut de Recerca HUVH
Sample_contact_address	Paseo Valle Hebron 119-129
Sample_contact_city	Barcelona
Sample_contact_zip/postal_code	08035
Sample_contact_country	Spain
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371304/suppl/GSM371304.CEL.gz
Sample_series_id	GSE14841
Sample_series_id	GSE14842
Sample_data_row_count	54613

GSM371305

GPL570

Jejunal biopsy, baseline, rep5

Jejunal biopsy, d-IBS, baseline

tissue: jejunal mucosa location: 10 cm from Treitz disease: diarrhea-IBS

Baseline. Replicate 5 of 5.

Sample_geo_accession	GSM371305
Sample_status	Public on Feb 14 2009
Sample_submission_date	Feb 13 2009
Sample_last_update_date	Feb 13 2009
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Homo sapiens
Sample_taxid_ch1	9606
Sample_treatment_protocol_ch1	Biopsies were placed in RNA later solution and stored at -80ºC until processed.
Sample_growth_protocol_ch1	Jejunal biopsies were obtained using the Watson's capsule in all participants. The instrument was orally inserted under fluoroscopic control 5 to 10 cm distal to the Treitz’s angle. Then, a tissue sample was obtained by suction with a 50 ml syringe.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Extraction of total RNA was performed using the Rneasy mini kit (Qiagen) according to the manufacturer's instructions.
Sample_label_ch1	biotin
Sample_label_protocol_ch1	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
Sample_hyb_protocol	Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 60ºC on GeneChip Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Sample_scan_protocol	GeneChips were scanned using the Affymetrix Genechip Scanner 3000.
Sample_data_processing	The data were analyzed with Microarray Suite version 5.0. Raw expression values obtained directly from .CEL files were preprocessed using the RMA method. These normalized values were the basis for all the analyses.
Sample_platform_id	GPL570
Sample_contact_name	Cristina,,Martinez
Sample_contact_email	crismart@ir.vhebron.net
Sample_contact_department	Digestive diseases research unit
Sample_contact_institute	Institut de Recerca HUVH
Sample_contact_address	Paseo Valle Hebron 119-129
Sample_contact_city	Barcelona
Sample_contact_zip/postal_code	08035
Sample_contact_country	Spain
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371305/suppl/GSM371305.CEL.gz
Sample_series_id	GSE14841
Sample_series_id	GSE14842
Sample_data_row_count	54613

GSM371306

GPL570

Jejunal biopsy, healthy, rep1

Jejunal biopsy, healthy

tissue: jejunal mucosa location: 10 cm from Treitz disease: healthy

Healthy. Replicate 1 of 4.

GSM371307

GPL570

Jejunal biopsy, healthy, rep2

Jejunal biopsy, healthy

tissue: jejunal mucosa location: 10 cm from Treitz disease: healthy

Healthy. Replicate 2 of 4.

GSM371308

GPL570

Jejunal biopsy, healthy, rep3

Jejunal biopsy, healthy

tissue: jejunal mucosa location: 10 cm from Treitz disease: healthy

Healthy. Replicate 3 of 4.

GSM371309

GPL570

Jejunal biopsy, healthy, rep4

Jejunal biopsy, healthy

tissue: jejunal mucosa location: 10 cm from Treitz disease: healthy

Healthy. Replicate 4 of 4.

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