Search results for the GEO ID: GSE14858  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM371781 | GPL570 |
|
Sample 1 - AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371781
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371781/suppl/GSM371781.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371781/suppl/GSM371781.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371782 | GPL570 |
|
Sample 2 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371782
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371782/suppl/GSM371782.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371782/suppl/GSM371782.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371783 | GPL570 |
|
Sample 3 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371783
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371783/suppl/GSM371783.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371783/suppl/GSM371783.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371784 | GPL570 |
|
Sample 4 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371784
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371784/suppl/GSM371784.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371784/suppl/GSM371784.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371785 | GPL570 |
|
Sample 5 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371785
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371785/suppl/GSM371785.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371785/suppl/GSM371785.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371786 | GPL570 |
|
Sample 6 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371786
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371786/suppl/GSM371786.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371786/suppl/GSM371786.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371787 | GPL570 |
|
Sample 7 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371787
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371787/suppl/GSM371787.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371787/suppl/GSM371787.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371788 | GPL570 |
|
Sample 8 - not-AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371788
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371788/suppl/GSM371788.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371788/suppl/GSM371788.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371789 | GPL570 |
|
Sample 9 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371789
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371789/suppl/GSM371789.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371789/suppl/GSM371789.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371790 | GPL570 |
|
Sample 10 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371790
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371790/suppl/GSM371790.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371790/suppl/GSM371790.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371791 | GPL570 |
|
Sample 11 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371791
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371791/suppl/GSM371791.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371791/suppl/GSM371791.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371792 | GPL570 |
|
Sample 12 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371792
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371792/suppl/GSM371792.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371792/suppl/GSM371792.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371793 | GPL570 |
|
Sample 13 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371793
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371793/suppl/GSM371793.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371793/suppl/GSM371793.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371794 | GPL570 |
|
Sample 14 - not-AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371794
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371794/suppl/GSM371794.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371794/suppl/GSM371794.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371795 | GPL570 |
|
Sample 15 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371795
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371795/suppl/GSM371795.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371795/suppl/GSM371795.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371796 | GPL570 |
|
Sample 16 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371796
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371796/suppl/GSM371796.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371796/suppl/GSM371796.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371797 | GPL570 |
|
Sample 17 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371797
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371797/suppl/GSM371797.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371797/suppl/GSM371797.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371798 | GPL570 |
|
Sample 18 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371798
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371798/suppl/GSM371798.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371798/suppl/GSM371798.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371799 | GPL570 |
|
Sample 19 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371799
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371799/suppl/GSM371799.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371799/suppl/GSM371799.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371800 | GPL570 |
|
Sample 20 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371800
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371800/suppl/GSM371800.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371800/suppl/GSM371800.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371801 | GPL570 |
|
Sample 21 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371801
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371801/suppl/GSM371801.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371801/suppl/GSM371801.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371802 | GPL570 |
|
Sample 22 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371802
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371802/suppl/GSM371802.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371802/suppl/GSM371802.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371803 | GPL570 |
|
Sample 23 - not-AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371803
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371803/suppl/GSM371803.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371803/suppl/GSM371803.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371804 | GPL570 |
|
Sample 24 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371804
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371804/suppl/GSM371804.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371804/suppl/GSM371804.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371805 | GPL570 |
|
Sample 25 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371805
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371805/suppl/GSM371805.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371805/suppl/GSM371805.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371806 | GPL570 |
|
Sample 26 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371806
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371806/suppl/GSM371806.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371806/suppl/GSM371806.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371807 | GPL570 |
|
Sample 27 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371807
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371807/suppl/GSM371807.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371807/suppl/GSM371807.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371808 | GPL570 |
|
Sample 28 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371808
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371808/suppl/GSM371808.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371808/suppl/GSM371808.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371809 | GPL570 |
|
Sample 29 - AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371809
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371809/suppl/GSM371809.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371809/suppl/GSM371809.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371810 | GPL570 |
|
Sample 30 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371810
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371810/suppl/GSM371810.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371810/suppl/GSM371810.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371811 | GPL570 |
|
Sample 31 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371811
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371811/suppl/GSM371811.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371811/suppl/GSM371811.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371812 | GPL570 |
|
Sample 32 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371812
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371812/suppl/GSM371812.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371812/suppl/GSM371812.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371813 | GPL570 |
|
Sample 33 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371813
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371813/suppl/GSM371813.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371813/suppl/GSM371813.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371814 | GPL570 |
|
Sample 34 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371814
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371814/suppl/GSM371814.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371814/suppl/GSM371814.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371815 | GPL570 |
|
Sample 35 - AML-like
|
stored and frozen Peripheral Blood cells
|
disease: JMML
tissue: Peripheral Blood
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371815
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371815/suppl/GSM371815.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371815/suppl/GSM371815.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371816 | GPL570 |
|
Sample 36 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371816
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371816/suppl/GSM371816.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371816/suppl/GSM371816.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371817 | GPL570 |
|
Sample 37 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371817
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371817/suppl/GSM371817.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371817/suppl/GSM371817.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371818 | GPL570 |
|
Sample 38 - AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371818
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371818/suppl/GSM371818.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371818/suppl/GSM371818.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371819 | GPL570 |
|
Sample 39 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371819
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371819/suppl/GSM371819.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371819/suppl/GSM371819.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
GSM371820 | GPL570 |
|
Sample 40 - not-AML-like
|
stored and frozen Bone Marrow cells
|
disease: JMML
tissue: Bone Marrow
|
Gene expression data from juvenile myelomonocytic leukemia samples at diagnosis
|
| Sample_geo_accession | GSM371820
| | Sample_status | Public on Jan 01 2010
| | Sample_submission_date | Feb 17 2009
| | Sample_last_update_date | Oct 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | stored, frozen Bone Marrow or Peripheral Blood cells
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA purification using selective binding columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450DX.
| | Sample_scan_protocol | GeneChips were scanned using the Scan GCS3000Dx.
| | Sample_data_processing | The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
| | Sample_platform_id | GPL570
| | Sample_contact_name | Andrea,,Zangrando
| | Sample_contact_email | andrea.zangrando@unipd.it
| | Sample_contact_phone | +390498211457
| | Sample_contact_fax | +390498211465
| | Sample_contact_laboratory | Hemato-Oncology
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Padova
| | Sample_contact_address | Via Giustiniani, 3
| | Sample_contact_city | Padova
| | Sample_contact_zip/postal_code | 35138
| | Sample_contact_country | Italy
| | Sample_contact_web_link | http://www.pediatria.unipd.it
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371820/suppl/GSM371820.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM371nnn/GSM371820/suppl/GSM371820.CHP.gz
| | Sample_series_id | GSE14858
| | Sample_data_row_count | 54675
| | |
|
| |
| |
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