Search results for the GEO ID: GSE14890  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM372052 | GPL339 |
|
Wild-type_macrophages_0h
|
wild-type macrophages unstimulated
|
strain: wild-type
|
none
|
| Sample_geo_accession | GSM372052
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372052/suppl/GSM372052.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372053 | GPL339 |
|
Wild-type_macrophages_1h
|
wild-type macrophages stimulated with LPS for 1 h
|
strain: wild-type
|
none
|
| Sample_geo_accession | GSM372053
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372053/suppl/GSM372053.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372054 | GPL339 |
|
Wild-type_macrophages_4h
|
wild-type macrophages stimulated with LPS for 4 h
|
strain: wild-type
|
none
|
| Sample_geo_accession | GSM372054
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372054/suppl/GSM372054.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372055 | GPL339 |
|
MyD88 KO_macrophages_0h
|
MyD88 KO macrophages unstimulated
|
strain: MyD88 KO
|
none
|
| Sample_geo_accession | GSM372055
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372055/suppl/GSM372055.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372056 | GPL339 |
|
MyD88 KO_macrophages_1h
|
MyD88 KO macrophages stimulated with LPS for 1 h
|
strain: MyD88 KO
|
none
|
| Sample_geo_accession | GSM372056
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372056/suppl/GSM372056.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372057 | GPL339 |
|
MyD88 KO_macrophages_4h
|
MyD88 KO macrophages stimulated with LPS for 4 h
|
strain: MyD88 KO
|
none
|
| Sample_geo_accession | GSM372057
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372057/suppl/GSM372057.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372058 | GPL339 |
|
TRIF KO_macrophages_0h
|
TRIF KO macrophages unstimulated
|
strain: TRIF KO
|
none
|
| Sample_geo_accession | GSM372058
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372058/suppl/GSM372058.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372059 | GPL339 |
|
TRIF KO_macrophages_1h
|
TRIF KO macrophages stimulated with LPS for 1 h
|
strain: TRIF KO
|
none
|
| Sample_geo_accession | GSM372059
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372059/suppl/GSM372059.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
GSM372060 | GPL339 |
|
TRIF KO_macrophages_4h
|
TRIF KO macrophages stimulated with LPS for 4 h
|
strain: TRIF KO
|
none
|
| Sample_geo_accession | GSM372060
| | Sample_status | Public on Feb 19 2009
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 18 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | stimulated with 100 ng/ml LPS for indicated periods
| | Sample_growth_protocol_ch1 | peritoneal macrophages were preprared from thioglycollate-injected mice.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cDNAs were used to prepare biotin-labeled cRNA by an in vitro transcription reaction performed using T7 RNA polymerase in the presence of biotinylated-ribonucleotides, according to the manufacturer's protocol (Enzo Diagnostics, Farmingdale, NY).
| | Sample_hyb_protocol | The cRNA product was purified using an RNeasy kit (Qiagen), fragmented, and hybridized to Affymetrix mouse expression array A430A microarray chips, according to the manufacturer's protocol (Affymetrix, Santa Clara, CA).
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix Gene CHIP scanner 3000.
| | Sample_data_processing | The data were analyzed with RMA using the arrayassist program (Stratagene).
| | Sample_platform_id | GPL339
| | Sample_contact_name | Osamu ,,Takeuchi
| | Sample_contact_email | otake@biken.osaka-u.ac.jp
| | Sample_contact_phone | 81-6-6879-8303
| | Sample_contact_fax | 81-6-6879-8305
| | Sample_contact_laboratory | Host Defense
| | Sample_contact_department | RIMD
| | Sample_contact_institute | Osaka University
| | Sample_contact_address | 3-1 Yamada-oka
| | Sample_contact_city | Suita
| | Sample_contact_state | Osaka
| | Sample_contact_zip/postal_code | 565-1871
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372060/suppl/GSM372060.CEL.gz
| | Sample_series_id | GSE14890
| | Sample_data_row_count | 22690
| | |
|
| |
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