Search results for the GEO ID: GSE14906  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM372143 | GPL1261 |
|
Wild-type Mouse Embryonic Heart (E12.5), sample 1
|
mouse embryonic heart, wild-type
|
strain: C57Bl/6
genotype: wild-type
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA served as a control to the experimental mutant sample (Fog2 null).
|
| Sample_geo_accession | GSM372143
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Fatima Smagulova (Tevosian Laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 10 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372143/suppl/GSM372143.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372143/suppl/GSM372143.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
GSM372145 | GPL1261 |
|
Fog2 (Zfpm2) null Mouse Embryonic Heart (E12.5), sample 1
|
mouse embryonic heart, Fog2 (Zfpm2) null
|
strain: C57Bl/6
genotype: Fog2 (Zfpm2) null
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA from the experimental mutant sample Fog2 (Zfpm2) null.
|
| Sample_geo_accession | GSM372145
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Fatima Smagulova (Tevosian Laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 10 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372145/suppl/GSM372145.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372145/suppl/GSM372145.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
GSM372153 | GPL1261 |
|
Wild-type Mouse Embryonic Heart (E12.5), sample 2
|
mouse embryonic heart, wild-type
|
strain: C57Bl/6
genotype: wild-type
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA served as a control.
|
| Sample_geo_accession | GSM372153
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Nikolay Manuylov (Tevosian Laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 10 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372153/suppl/GSM372153.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372153/suppl/GSM372153.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
GSM372160 | GPL1261 |
|
Fog2 (Zfpm2) null Mouse Embryonic Heart (E12.5), sample 2
|
mouse embryonic heart, Fog2 (Zfpm2) null
|
strain: C57Bl/6
genotype: Fog2 (Zfpm2) null
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA from the experimental mutant sample Fog2 (Zfpm2) null.
|
| Sample_geo_accession | GSM372160
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 18 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Nikolay Manuylov (Tevosian Laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 10 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372160/suppl/GSM372160.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372160/suppl/GSM372160.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
GSM372265 | GPL1261 |
|
Wild-type Mouse Embryonic Heart (E12.5), sample 3
|
mouse embryonic heart, wild-type
|
strain: C57Bl/6
genotype: wild-type
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA served as a control to the experimental mutant sample (Gata4ki/ki). The GATA4ki mutation specifically cripples the interaction between the GATA4 protein and FOG molecules.
|
| Sample_geo_accession | GSM372265
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 19 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Nikolay Manuylov (Tevosian laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 8 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372265/suppl/GSM372265.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372265/suppl/GSM372265.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
GSM372285 | GPL1261 |
|
GATA4ki Mouse Embryonic Heart (E12.5), sample 3
|
mouse embryonic heart, GATA4ki/ki mutant
|
strain: C57Bl/6
genotype: GATA4ki mutation
tissue: heart (both atria and ventricles)
developmental stage: embryo
day: E12.5
|
E12.5 cardiac RNA from the experimental mutant sample (Gata4ki/ki). The GATA4ki mutation specifically cripples the interaction between the GATA4 protein and FOG molecules.
|
| Sample_geo_accession | GSM372285
| | Sample_status | Public on Feb 18 2010
| | Sample_submission_date | Feb 19 2009
| | Sample_last_update_date | Feb 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | Nikolay Manuylov (Tevosian laboratory)
| | Sample_treatment_protocol_ch1 | Tissue was isolated from embryos in PBS
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA isolated from the 8 E12.5 Embryonic Hearts using RNeasy Mini kit (Qiagen). Total RNA quantity was determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Inc.)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Synthesized cRNA were labeled during transcription (Megascript system; Ambion) with biotin-11-cytidine triphosphate and biotin-16-uridine triphosphate (Enzo Diagnostics).
| | Sample_hyb_protocol | Biotinylated cRNA products were hybridized to Affymetrix GeneChip mouse arrays for 16 h at 40oC in a Gene Chip Hybridization oven 640 using the manufacturer's hybridization buffer (Affymetrix).
| | Sample_scan_protocol | After hybridization, the arrays were washed and stained using the Fluidics Station 450 (Affymetrix). Chips were scanned with the 7G Affymetrix Gene Scanner (Affymetrix) according to manufacturer's recommendation.
| | Sample_data_processing | MAS5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sergei,G,Tevosian
| | Sample_contact_email | tevosian@dartmouth.edu
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth Medical School
| | Sample_contact_address | 7400 Hinman Box
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372285/suppl/GSM372285.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM372nnn/GSM372285/suppl/GSM372285.CHP.gz
| | Sample_series_id | GSE14906
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
